Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g527 ATGCTCTGGCCAGGCACTGCAGCTCAGTCGAGTTGCACAAGCGTCATAATCAGCATGTCGCCATGTCTTAACTACATTTCAGGGAACTCCTCAACCCCGTCTTCAGGATGCTGCACTCAACTTGCTAGTGTTGTCCGCTCGCAGCCACAGTGCCTGTGTGAGGTTCTGAATGGTGGTGGGTCTTCTGTGGGGATCAACATCAACCAAACTCAAGCTCTGGCACTACCTGGCGCTTGCAATGTTCAGACTCCTCCCCTCAGCCGCTGTAATGCTGCTTCTCCAGCAGACTCCCCAGCAGCAATGCCTGAATCTCCAACTACAGTTCCCTCAGATGGCGGATCCAAAACCGTACCATCAACAGACAACGGCACATCAAATGGAAGTTCCACAAAATCATCAATGTCCCTGCTCTTCATCCTTCTCATTGCTGCATCATATGCTTCAACTTTCATCGCAGGATAA 462 50.87 MLWPGTAAQSSCTSVIISMSPCLNYISGNSSTPSSGCCTQLASVVRSQPQCLCEVLNGGGSSVGININQTQALALPGACNVQTPPLSRCNAASPADSPAAMPESPTTVPSDGGSKTVPSTDNGTSNGSSTKSSMSLLFILLIAASYASTFIAG* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5436487 5437596 - Vvi5g527 Vvi5g527 786669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g527 153 Pfam Probable lipid transfer 6 89 IPR016140 -
Vvi5g527 153 Gene3D - 9 94 IPR036312 -
Vvi5g527 153 CDD AAI_LTSS 19 81 - -
Vvi5g527 153 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 1 149 IPR043325 -
Vvi5g527 153 PANTHER - 1 149 - -
Vvi5g527 153 MobiDBLite consensus disorder prediction 90 129 - -
Vvi5g527 153 MobiDBLite consensus disorder prediction 103 129 - -
Vvi5g527 153 PRINTS Plant phospholipid transfer protein signature 11 27 IPR000528 GO:0006869|GO:0008289
Vvi5g527 153 PRINTS Plant phospholipid transfer protein signature 32 46 IPR000528 GO:0006869|GO:0008289
Vvi5g527 153 PRINTS Plant phospholipid transfer protein signature 66 83 IPR000528 GO:0006869|GO:0008289
Vvi5g527 153 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 11 90 IPR036312 -
Vvi5g527 153 SMART aai_6 12 89 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g527 - - - vvi:100252788 268.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g527 Vvi7g82 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77