Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g528 ATGGCTTTAAGAGTGACTGGCATGGGGCTAGTAGTGGTTCTATCTGCAATGCTTTGGGCTAAAGCCATGGCTCAATCGGGTTGCACCACTGTGCTCATTGGCATGGCTCCATGCCTAAACTACATTACAGGAAGTTCCTCGAGCCCCTCTTCTTCATGCTGCTCACAACTAGCCAGTGTTGTTCAGTCACAGCCGCGATGCCTTTGTGTGGCACTCAATGGCGGTGGTGCAGCTTTGGGTATCACAATTAACCGGACTCTTGCCCTGGCGCTCCCTGGTGCGTGCAATGTACAAACTCCGCCTGTTAGCCAATGTGATGGTAAGGCTCAAATGGATGTCTTTACTGATCATCATTAA 357 50.42 MALRVTGMGLVVVLSAMLWAKAMAQSGCTTVLIGMAPCLNYITGSSSSPSSSCCSQLASVVQSQPRCLCVALNGGGAALGITINRTLALALPGACNVQTPPVSQCDGKAQMDVFTDHH* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5440365 5440722 - Vvi5g528 Vvi5g528 786670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g528 118 Pfam Probable lipid transfer 20 105 IPR016140 -
Vvi5g528 118 SMART aai_6 28 105 IPR016140 -
Vvi5g528 118 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vvi5g528 118 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Vvi5g528 118 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Vvi5g528 118 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 106 IPR036312 -
Vvi5g528 118 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 2-LIKE ISOFORM X1 7 107 - -
Vvi5g528 118 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 7 107 IPR043325 -
Vvi5g528 118 Gene3D - 25 105 IPR036312 -
Vvi5g528 118 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g528 - - - vvi:100263007 199.904
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g528 Vvi7g81 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77