Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g53 ATGGCTTCTGGTTCGGAGGAGGGATCAGGGTTTCCGGCCGACGATTATGAGTCGTTGATAGCGACGACCGATGTGGAGCTGTTGAAGAGGGCGTGGAGGAACGAGAAGGCTGCTCCCGAGATTCTCCATTTTCAAACTGCGCTGGTGCAAAGATCTAGAGAACAGATCCAGTTGATGGAAGAAACTGTGGAGGAATTTGGAGAAAATGGTACTGATCCACTAACTGTATCACTCTATCAGATGGACTTGGATAGGACTCAGTTTTTGTTGAGATCATATCTTCGAATTCGTCTTCAGAAGATTGAGAAATACATGTTCCACATCTTAAAAACTGATGTTTGGAGTCGGCTTTCTGAGCAAGAGCAAAAGTTTGCCAAAAGGTGTACTGATGACATGGAAAGACATCTTGAACAGTCTGTTCTCTCAAGATTGCCAGATGGTTACCAGTCTATTCTAAAGCAGTCTGTAGCAAGTGAAGAGGATGACATGGTTCCGGAGCCACGGTTGGACACCTTTGTCTTCTGCAAAAGCAAAGGATCTATCGAAGCTTTCCAGCTTGATGACAGCAAAGAAGTGGTGGACCTGGTTGCTGATGATTTATACATTCTTCGCTACAACTCAGTAAAGCCACTCATAGAAAGCGGCCAAATTGATTTGGTGTAA 663 44.65 MASGSEEGSGFPADDYESLIATTDVELLKRAWRNEKAAPEILHFQTALVQRSREQIQLMEETVEEFGENGTDPLTVSLYQMDLDRTQFLLRSYLRIRLQKIEKYMFHILKTDVWSRLSEQEQKFAKRCTDDMERHLEQSVLSRLPDGYQSILKQSVASEEDDMVPEPRLDTFVFCKSKGSIEAFQLDDSKEVVDLVADDLYILRYNSVKPLIESGQIDLV* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 602814 610049 + Vvi5g53 Vvi5g53 786195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g53 220 Pfam DNA replication complex GINS protein SLD5 C-terminus 167 220 IPR031633 -
Vvi5g53 220 PANTHER SLD5 PROTEIN 13 220 IPR008591 GO:0006261
Vvi5g53 220 SUPERFAMILY PriA/YqbF domain 169 220 - -
Vvi5g53 220 Pfam GINS complex protein 47 121 IPR021151 -
Vvi5g53 220 Gene3D - 12 210 - -
Vvi5g53 220 Coils Coil 49 69 - -
Vvi5g53 220 CDD GINS_A_Sld5 24 141 IPR038749 -
Vvi5g53 220 PIRSF GINS_Sld5 2 220 IPR008591 GO:0006261
Vvi5g53 220 SUPERFAMILY GINS helical bundle-like 21 152 IPR036224 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g53 K10735 - vri:117914731 434.106