Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g530 ATGGCTGCTACTGGGTGGGATGATGAGTGCTCTGTCATTGGAGACAAAGGTGAAATTGGGTTTATTGATTTTGAGAATGATGCATCCGTGTGTGATTACAACCCGAGTGAAGAAGGTCCAGTTGTTGTTTCTGTCCCATTTGCCTTCAAAGGGAAGCCTAAATCAATATTCGTGGGGGAAACTGCTACTGACTGTGTAACCTTAGAGAACACCACTAGTGAACCTGTGGAACTCTGGGCAGTAAGAATATTTGCATCCACTCCTGAGGACTCATTCACAGTTTCTTTAATGGAACCACCATCAGCAGGTGTAGACATCAAATACATTCAAGAATTTCTGGAGTCTTTTTGCTTGGAAGACAGAGTGCTTCAGCCCGGGGAAACTTTGACTGTGTGGGTATCTTGCAAGCCAAAGGAAATTGGCCTGCACACATCGGTTGTGCACTTTGATTTGGGGTCAGACAGGATAGAGCGGGTGATTTTCCTTTTGGCTGAAGATAGGGTTTCACAATCTTTGGCCCCAAACAAGCCATATTCAAGAGGCTCAAGAAAGAAGGTGTTTAATGTGCAGGAATATGTTGTGGGTTCACGACCTGCAAGACCGAATACCCGAAGTTTCAGATATAGGCTTCCTCAATATGTAATTCCAAATGATGTTAGAGAATTAGTGGAGGGTAAGCAGATCCCTGATACCATCTTAGAAGGCCTAACAAGAGACAATTATGAATCTTACTTCAAAACTTTACTGATCATGGAAGAAATTCGCATGGAGGAAGACATGAGGAGCTATGACATGGAGCGTGTGACTATGAGGAGGAAGGGGACGCAATTCTTGACCCTTGAGGTCCCTGGCCTGGCTGAGAAAAGACCTTCACTTGTTCATGGGGATTACATTTTTGCCAAGCTTGCCTATGAAGATGAAAATGATTTGAGTCCTCCATATCAGGGTTTCATCCATCGTGTTGAGGCTGAACAGGTGTACTTGGGTTTTGCCAAAGAATTCATCTGGCATCATACGGATGAAAGTCTCTACAATGTAAGGTTCACTTACAATCGAGTGAATATGAGAAGATTATATCAGGCTATAGACTCTGCAAAAGGGTTAGAGATGGATCTCCTCTTTCCTTCTGATTCTAGAAGGAGACTGATCAAAGCAACTCACATGGTCCCTATATCTTTTAATCTCAATGAGGAGCAGATTTTTTCAATTAAAATGATACTTGGCTGCAGAGGGGCACCACCTTATGTGATCCATGGCCCTCCAGGTACAGGTAAGACTAAGACAATGGTGGAAGCAATCCTCCAGCTCTATTTGACTCAAAAGAATACTCGCATTCTAGTCTGTGCACCTTCAAATAGTGCTGCAGACCACTTATTAGAACGACTCCTTGCTGAGAAGGCTGTGGAAGTACAAGGGAATGAGATATTCAGACTAAATGCAACTTCTCGCCCTTATGAGGATATGAATCCTGACTTCATTCGTTTTTGCTTCTCTGAAGACTTGATCTTCAAGTGTCCTCCACTCAATGACCTCAAGCGCTATAGGATAATTATTTCAACTTACATGAGTGCCGCTCTCCTTTATGCAGAAGGTGTCAAGCGGAGCCACTTCTCTCACATTTTATTGGATGAGGCTGGCCAAGCTTCTGAGCCAGAAACGATGATTCCTCTATCCCACCTTTGCCAGAGGAAAACAGTTGTTGTTCTTGCTGGAGACCCAATGCAACTGGGTCCTGTAATTTACTCCAAAGATGCAGAGACCTACTGCTTGGGAAAATCATACTTGGAGAGGCTTTTTGAATGTGAGTTTTACCACAAGGAGGATGAAAACTATGTAACCAAATTAGTTAGAAACTACCGATGTCACCCAGAAATCCTACATCTTCCCTCACAGCTGTTTTATAAAGGGGAACTGATCCCGTGCAAAGATGATAAAAGTTCCTCCATGACTTGGGCTGAAATCCTTCCTAACAGGGACTTTCCTGTTCTTTTCATTGGCGTCCAAGGCTATGATGAAAGGGAAGGAAGCAACCCATCGTGGTTTAATAGGACTGAGGCAAGTAAGGTGGTGGAGATCATTAAGAAGCTTACTATAAGCCAGGATCTGAGAGAGGAAGATATTGGGGTAATAACACCATATAGGCAGCAGGTACTCAAATTAAAGAAGGCCCTGGAAGGTGTTGATATGCCTGCTATCAAGGTTGGCAGTGTTGAGCAATTTCAAGGACAAGAGAGGGAAGTTATTATTATATCTACCGTCCGATCAACAATTAAACACAATGAGTTTGACAAAAACCACTGTTTGGGATTTTTGAGCAATCCCAGAAGGTTTAATGTGGCTATTACCCGAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAGGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTACCAGGGCTGTGCTCTTCCTGAGAGGCAGGATTTTGTTGACAAGGAACCTGTGCAGTTCAGCTTCAACCATGAAGAAGAGAACCCTCAACCCTCCAATGAAGTTGAAAGGGGTGAAGAGCCCTTTCAAGCAGAAGAGATCCCTAAACCTGTTAAGGATGAAGCTGAATGGTCTGATGGTTGGAAGTAA 2634 43.09 MAATGWDDECSVIGDKGEIGFIDFENDASVCDYNPSEEGPVVVSVPFAFKGKPKSIFVGETATDCVTLENTTSEPVELWAVRIFASTPEDSFTVSLMEPPSAGVDIKYIQEFLESFCLEDRVLQPGETLTVWVSCKPKEIGLHTSVVHFDLGSDRIERVIFLLAEDRVSQSLAPNKPYSRGSRKKVFNVQEYVVGSRPARPNTRSFRYRLPQYVIPNDVRELVEGKQIPDTILEGLTRDNYESYFKTLLIMEEIRMEEDMRSYDMERVTMRRKGTQFLTLEVPGLAEKRPSLVHGDYIFAKLAYEDENDLSPPYQGFIHRVEAEQVYLGFAKEFIWHHTDESLYNVRFTYNRVNMRRLYQAIDSAKGLEMDLLFPSDSRRRLIKATHMVPISFNLNEEQIFSIKMILGCRGAPPYVIHGPPGTGKTKTMVEAILQLYLTQKNTRILVCAPSNSAADHLLERLLAEKAVEVQGNEIFRLNATSRPYEDMNPDFIRFCFSEDLIFKCPPLNDLKRYRIIISTYMSAALLYAEGVKRSHFSHILLDEAGQASEPETMIPLSHLCQRKTVVVLAGDPMQLGPVIYSKDAETYCLGKSYLERLFECEFYHKEDENYVTKLVRNYRCHPEILHLPSQLFYKGELIPCKDDKSSSMTWAEILPNRDFPVLFIGVQGYDEREGSNPSWFNRTEASKVVEIIKKLTISQDLREEDIGVITPYRQQVLKLKKALEGVDMPAIKVGSVEQFQGQEREVIIISTVRSTIKHNEFDKNHCLGFLSNPRRFNVAITRAKSLLIIIGNPHIISKDLYWNKILWHCSDNDSYQGCALPERQDFVDKEPVQFSFNHEEENPQPSNEVERGEEPFQAEEIPKPVKDEAEWSDGWK* 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5444221 5449261 - Vvi5g530 Vvi5g530 786672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g530 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 807 IPR027417 -
Vvi5g530 877 Gene3D Immunoglobulins 53 163 IPR013783 -
Vvi5g530 877 MobiDBLite consensus disorder prediction 844 877 - -
Vvi5g530 877 PANTHER RNA HELICASE SDE3-RELATED 4 842 - -
Vvi5g530 877 CDD DEXXQc_Helz-like 395 620 - -
Vvi5g530 877 Gene3D - 620 822 IPR027417 -
Vvi5g530 877 Pfam AAA domain 591 794 IPR041679 -
Vvi5g530 877 MobiDBLite consensus disorder prediction 833 877 - -
Vvi5g530 877 CDD SF1_C_Upf1 621 810 IPR041679 -
Vvi5g530 877 Gene3D - 322 607 IPR027417 -
Vvi5g530 877 Pfam AAA domain 395 487 IPR041677 GO:0004386
Vvi5g530 877 Pfam AAA domain 511 583 IPR041677 GO:0004386
Vvi5g530 877 PANTHER DNA2/NAM7 HELICASE FAMILY 4 842 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g530 K18422 MOV10; helicase MOV-10 [EC:3.6.4.13] - vvi:100247679 1767.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34