Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g532 ATGCCCTCATCATTCTTACTTCGCCGGCACTTGTCATTCTCCGGCATTTCTCCTACATTTCACGGAACGATGGAGCCCTTCCATCGGCACCTGGAATTGAGGTTCAGAATTCTAGTTGGTGTTTGTAATAGGATAAGGCAGTTCAGCAGCTCCAGTAGTACCTCGAAGCTTGATTTCATGGACCTGACTCATCCTCATACATGGTACCCAAATGCTCGAAGAAAGAGCCGGAAAGTGATCATGCATGTAGGTCCCACAAATAGTGGTAAAACACACCATGCTCTGAAGCGACTAGAGTCAAGTTCTTCTGGCATATATTGTGGACCTTTAAGACTCTTGGCATGGGAGGTGGCAAAAAGGTTGAACAAGGCAAATGTTCCTTGTGATATGATTACAGGACAAGAGAGAGAGGAAATTGATGGTGCAAAACACAAGGCCATGACTGTTGAGATGGCTGATGTGACCTCGGACTATCATTGTGCTGTCATTGATGAAATTCAGGCATTCAGAGAAAGCAACTATTGGTATAGCCTTTTAATTTTCCCTGTTGTGGCTCCTTCAGGGGTGTCTCATGTACACCATGTATACAATCTGCTGGGCCTTTGGTTCCTTCTAATTAATTACAAAAAAGCAATGTTGGGATGTAGGACAAGGGGTTTTTCATTTACGCGTGCTCTATTAGGAATTTCTACTGATGAACTTCACCTCTGTGGAGATGTGTCTTCTGTTCCTCTTATTCAGGGAATACTTAAGGTGACAGGAGATGATTTTGAGGTTCAATATTATGAGAGACTTTCACCTCTAGTTCCATTGAATGTTCCTCTCAGATCCTTTTCTGATATACAAACAGGCGACTGCATTGTAACTTTTTCACGTCGTCAAATATACAAGTTAAAGAGACAAATTGAAAATGGGGGGAAGCATCTTTGTTCTGTAGTTTATGGTTCACTGCCACCAGAGACTCGAACAAGACAGGCAACAATGTTCAATGATGCAACCAGCGAGTTTGATGTTCTTGTGGCTAGTGATGCCATTGGGATGGGTCTTAATCTGAACATTTCTAGAATCATATTTTCAACATTGAAAAAATTTGATGGCATAGAGGAGCGGGATCTCACTGTACCAGAGATCAAACAAATTGCAGGGAGAGCTGGCAGGTTTGGATCAAAATTTCCTGATGGTGAAGTGACTTGTATGAATGTGAAGGATCTACCCTTGCTACATTCATCACTGAAATCCCTATCTCCTGTTCTAGAGCGTGCTGGATTATTTCCAACCTTTGATCTCTTGTTTATGCATTCACGTTTTCATCCAACAAAAAGCCTCTATCAGATGTTGGAGCATTTTGTAGATAATGCCAAATTATCTTCAAACTATTTCATTGCTGATTGTGAAGAAATGTTGAAAGTTGCTGCAATCGTTGATGAGTTGCCCCTTGGGTTGCATGATAAGTACCTTTTTGTCATTAGTCCAGTTGACATGAACAATGACATTTCATCTCAGGGTCTTATACAGTTTGCACAAACTTATGCGAAGAAGGGCATTGTTCGACTTCGGGAAATATTTACACCAGGGACACTTCAAGTGCCGAAATCACATTCTGCACTTAAGGAGCTTGAATCCATTTACCAGGTATTGGATCTTTATGTGTGGCTGAGTTTCCGATTGGAGGATTCGTTCCTAGACCGTGAGCTGGCATTGTCACAGAGGGCCATCTGTAGCATGTTGATTGAGGGGTTCCTGGAAAGAGGAGGGTGGCGACAGCCAATGGCAAGTAGTGTGCCCTCTCGCATTAGCTCAAATTCTCTTTTATCACAATCAAACAAGCAAGATCTGTGA 1839 42.25 MPSSFLLRRHLSFSGISPTFHGTMEPFHRHLELRFRILVGVCNRIRQFSSSSSTSKLDFMDLTHPHTWYPNARRKSRKVIMHVGPTNSGKTHHALKRLESSSSGIYCGPLRLLAWEVAKRLNKANVPCDMITGQEREEIDGAKHKAMTVEMADVTSDYHCAVIDEIQAFRESNYWYSLLIFPVVAPSGVSHVHHVYNLLGLWFLLINYKKAMLGCRTRGFSFTRALLGISTDELHLCGDVSSVPLIQGILKVTGDDFEVQYYERLSPLVPLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIENGGKHLCSVVYGSLPPETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKKFDGIEERDLTVPEIKQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGLFPTFDLLFMHSRFHPTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELPLGLHDKYLFVISPVDMNNDISSQGLIQFAQTYAKKGIVRLREIFTPGTLQVPKSHSALKELESIYQVLDLYVWLSFRLEDSFLDRELALSQRAICSMLIEGFLERGGWRQPMASSVPSRISSNSLLSQSNKQDL* 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5481020 5492341 + Vvi5g532 Vvi5g532 786674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g532 612 Gene3D - 410 488 - -
Vvi5g532 612 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 536 583 IPR022192 GO:0016817
Vvi5g532 612 Gene3D - 65 198 IPR027417 -
Vvi5g532 612 Gene3D - 206 263 IPR027417 -
Vvi5g532 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 390 IPR027417 -
Vvi5g532 612 SMART helicmild6 300 388 IPR001650 -
Vvi5g532 612 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 257 431 IPR001650 -
Vvi5g532 612 CDD DEXQc_Suv3 77 262 IPR044774 GO:0003724|GO:0005524
Vvi5g532 612 Pfam Helicase conserved C-terminal domain 287 388 IPR001650 -
Vvi5g532 612 Gene3D - 264 409 IPR027417 -
Vvi5g532 612 Pfam Suv3 C-terminal domain 1 470 511 IPR041082 -
Vvi5g532 612 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 212 590 - -
Vvi5g532 612 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 24 168 - -
Vvi5g532 612 MobiDBLite consensus disorder prediction 592 612 - -
Vvi5g532 612 Gene3D - 490 592 - -
Vvi5g532 612 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 24 168 - -
Vvi5g532 612 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 212 590 - -
Vvi5g532 612 CDD SF2_C_suv3 266 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g532 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - vvi:100264771 1067.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g532 . . . . . Bpe14g01202 . . . . . Cma14g01728 . Car14g01559 . . Cpe03g01451 Bhi01g00784 . . . Hepe05g1572 . Lcy11g1567 . . . . . . . Cone14ag0866 . . . Lsi05g01623 . . Cme06g00591 Blo02g00530 . . Bda13g00108 . . Bma02g00831 . . . Cmo14g01767 . . . . . . . . . . . . . Cla05g00523 Cam05g0576 Cec05g0586 Cco05g0584 Clacu05g0572 Cmu05g0542 Cre05g0611 . Csa03g01305 Chy06g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008560 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 34