Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g533 ATGAGACTATGGACTCCAACAGTTATTGGCCTTTCATCAAAGTCCATTTCATTTGCCTTTATCAGACTCCTGCAAATAAGCTCATTCAGGTACTCTTCCCCCACCTCTTCAAGAGTCTTGCCTCTCTCCTCTGAAATATCTAAAGCTTTGGAGGTGTATGAGAAGATGAATGGAAGCAATGTGTTGACCTATAATACCATGATCTCTGCTGCCTGCATGCATTCCCAGGAAGAAGATGCCTTGAAGCTGCTTCTGAAAATGGAAGAAAGTTCCTGCAAGCCTGATCTTAATACTTACTCCCCTTTACTGAAAATGTGCTGCAGAAACAACAGAATGAAGGTGCTTTCAGCATTGTTGAACCACATGTTTAAGAACGACACAAGTCTTGAAGCTGGAACCTATTCTCTCTTGGTGCATGGACTGTGTAAGAGTGGGAAACTTGAACATGCTTGCTTGTTTTTTGAGGAAATGGTATTTAGGATGCATCCCCTGATCCATCACTTTTCTCTACTCTTTTTCTTTCTGGGCATGGGTCATTTTGTGTAA 546 41.76 MRLWTPTVIGLSSKSISFAFIRLLQISSFRYSSPTSSRVLPLSSEISKALEVYEKMNGSNVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDTSLEAGTYSLLVHGLCKSGKLEHACLFFEEMVFRMHPLIHHFSLLFFFLGMGHFV* 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5493038 5501495 - Vvi5g533 Vvi5g533 786675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g533 181 Pfam PPR repeat 133 158 IPR002885 -
Vvi5g533 181 TIGRFAM PPR: pentatricopeptide repeat domain 133 158 IPR002885 -
Vvi5g533 181 TIGRFAM PPR: pentatricopeptide repeat domain 63 95 IPR002885 -
Vvi5g533 181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Vvi5g533 181 Pfam PPR repeat family 60 108 IPR002885 -
Vvi5g533 181 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 43 161 - -
Vvi5g533 181 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Vvi5g533 181 Gene3D Tetratricopeptide repeat domain 14 168 IPR011990 GO:0005515
Vvi5g533 181 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 43 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g533 - - - vvi:100249363 205.682
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069821 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1