Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g536 ATGGCTTCCAGCCTTTGCCTCTCTCCTCTGCTCTCCGCCACCCAAATCAAAGAGGCCGACCCCATGACCAAAGACAGTTGTTTGAATGAATCACTTCGATGTTGCAAAACCTTGAACCAACTCAAGCAGTTACACTGTCAAATTACTAAGAACGGTCTTGATCAGATCCCTTCTACTCTAACCAAGCTGGTCAACGCTGGCGCAGAAATTGCCTCGCCGGAAAGCTTAGACTACGCTCGAAAGGCCTTTGAGCTCTTCAAAGAAGATGTAAGAAGCGATGATGCGCTTTTCATGCTTAACTCTTTGATCAGAGGTTACTCTTCTGCTGGTCTTGGCCGCGAAGCTATCTTGCTTTATGTTCGGATGTTGGTCCTAGGCGTTACACCTAATCACTATACCTTTCCATTTGTTTTGAGTGGGTGCACAAAGATCGCAGCCTTCTGTGAGGGGATTCAAGTTCATGGGTCGGTTGTCAAGATGGGTTTAGAGGAAGATGTGTTTATACAGAACTGTTTGATTCATTTCTATGCTGAATGTGGACACATGGATCATGGGCACAAAGTGTTTGAGGGAATGTCTGAAAGAAATGTTGTTTCGTGGACTAGTTTGATTTGTGGTTACGCTCGTGGGGATCGTCCAAAAGAGGCCGTTTCTTTGTTTTTTGAAATGCTCAATAAAGTCATGGTGAATGCGCTCGTCGACATGTACATGAAATGCGGTGCAATCGATGCTGCAAAGCGGCTCTTTGATGAATGTGTTGATAGAAATTTGGTCCTTTACAATACGATCTTGTCAAATTATGCGCGCCAGGGGTTGGCGAGAGAGGCGCTTGCCATATTAGATGAAATGCTGCAACAAGGCCCTCGACCCGACAGGGTCACAATGTTATCTGCAATCTCGGCCTCCGCACAGTTAGTTGATCTTTTCTATGGAAAGGTGTGCCATGGTTATTGGGTTCACACTTACATTGAAAAGAATGGAATTCCTTGTGATATGCGGCTCAATACAGCTCTGGTTGATATGTTTGCTAGGTGTGGTGATCCTCAAAGTGCAATGCAAGTCTTCAATAAAATGACTGAAAGAGATGTATCTGCTTGGACTGCAGCCATTGGAACAATGGCCATGGAGGGAAATGGGGAAGGAGCAACTGGACTTTTCAACCAGATGCTTATTCAAGGAGTGAAACCTGATGTGGTACTATTTGTGCAAGTACTGACTGCATGTAGCCATGGTGGGCAAGTGGAACAAGGCTTGCATATTTTCAGTTTGATGGAGGACCATGGAATCTCCCCCCAAATTGAACATTATGGGTGCATGGTTGATTTACTTGGCCGAGCTGGATTACTGAGGGAAGCTTTTGATCTCATAAAGAGCATGCCCATGGAGCCTAATGATGTGGTTTGGGGTTCTCTCTTAGCTGCTTGCCGGGTCCATAAGAATGTTGAAATGGCTACATATGCAGCTGAAAGGATAAATGAATTGGCTCCTCAGAGAGCTGGGGTCCATGTGCTTCTTTCAAACATATATGCTTCTGCTGGGAAATGGACGGACGTTGCAAGAGTGAGACTAAACTTGAGGGAAAAAGGGGTTCGCAAAGTGCCCGGATCAAGCTCGGTACAGGTTAATGGTGTAATACATGAGTTCACCTCTGGGGATGAATCACATCCAGAAATGACCCACATTGCCTTGATGCTACAGGAGATGAACTGCAGATTCTCAGACGCTGGCCATATTCCTGATCTATCCAATGTTTTACTTGATGTTGATGAGCAGGAGAAAGAGTACCTGCTCAGTCGACATAGTGAGAAACTTGCTATTGCATTTGGGCTTATCGCTACAGGCCGAAGCATGCCAATTCGTGTTGTTAAGAATCTGCGCATGTGCTCTGATTGCCACTCCTTTGCCAAAATGGCATCAATAATATATAATCGGGAAATTATTGTTAGAGATAATAATAGGTTTCACTTCTTCCGGCAAGGCTTATGTTCTTGTTGTGATTATTGGTAA 2007 44.74 MASSLCLSPLLSATQIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5509388 5511899 - Vvi5g536 Vvi5g536 786678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g536 668 Pfam DYW family of nucleic acid deaminases 576 668 IPR032867 GO:0008270
Vvi5g536 668 Pfam Pentatricopeptide repeat domain 385 443 IPR002885 -
Vvi5g536 668 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 285 317 - -
Vvi5g536 668 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 229 285 - -
Vvi5g536 668 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 57 225 - -
Vvi5g536 668 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 318 643 - -
Vvi5g536 668 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 285 317 - -
Vvi5g536 668 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 318 643 - -
Vvi5g536 668 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 229 285 - -
Vvi5g536 668 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 57 225 - -
Vvi5g536 668 SUPERFAMILY TPR-like 192 519 IPR011990 GO:0005515
Vvi5g536 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vvi5g536 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 336 362 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 98 127 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 227 256 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 198 225 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 258 287 IPR002885 -
Vvi5g536 668 Pfam PPR repeat 170 197 IPR002885 -
Vvi5g536 668 Gene3D Tetratricopeptide repeat domain 25 144 IPR011990 GO:0005515
Vvi5g536 668 Gene3D Tetratricopeptide repeat domain 308 394 IPR011990 GO:0005515
Vvi5g536 668 Pfam E motif 478 540 IPR046848 -
Vvi5g536 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi5g536 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi5g536 668 Gene3D Tetratricopeptide repeat domain 147 226 IPR011990 GO:0005515
Vvi5g536 668 Gene3D Tetratricopeptide repeat domain 227 307 IPR011990 GO:0005515
Vvi5g536 668 Gene3D Tetratricopeptide repeat domain 395 501 IPR011990 GO:0005515
Vvi5g536 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 169 198 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 403 431 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 98 130 IPR002885 -
Vvi5g536 668 TIGRFAM PPR: pentatricopeptide repeat domain 336 364 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g536 - - - vvi:100266544 805.438
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g536 . . . . . . . . . . Cma06g01391 . Car06g01200 . . . . Bhi01g00780 . . . . . . . . . . . . . . . . Cone4ag0258 . . . Cme06g00589 . . . . . Bpe13g00595 . . . Cmo06g01396 . . . . . . . . . . . . . . Cla05g00520 . . . . . . . . Chy06g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013750 0 1 0 0 1 1 2 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 0 1 1 1 1 22