Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g538 ATGAATGGAACCCCGCGCTTTTCGCTCCTTTCTCAACAGATTCTCGCCCCCATTCTCTTCGATTCAGTTTTCATTCGTTTCTATCTCTTGCCTCCTTTCCTTCTCCAATACTGGATTGGTTCGGGGATTACTCCTCCAGATCACATCCCCCCAGAAGCTCTACCTCTAACCTGTACCCTTCACCTTCATCAGCTGATGCCATATGCCCTCCAACGACTCGAAATTGGAGGAGCTATGATTGCTGAGAAATCGGATTGCAAAGAAAGCAGTACGGGCTCGAAGGTGAAGGGTACAGGAAGCCTTAGTAATAAGGATAAGATTTTTAGAGCGGATAAAATTGATCTGAAAAGCTTGGATATACAGTTGGAGAAGCACTTGAGTAGGGTTTGGTCGAGAAGCATCGACTCCCAAAGGCCTAAAGAAGAGTGGGAGATAGATTTATCTAAATTGGATATAAAGCATGTTGTGGCTCATGGGACATATGGTACAGTCTACCAGGGTACTTACGATAACCAAGATGTTGCAGTGAAGGTATTAGACTGGGGAGAGGATGGCATTCCCACAACTGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACAATCCAAATGTTACGAAGTTTATTGGAGCTTCAATGGGAACCTCAAATCTTAAGGTTCCCACTCAGAGCCTTCCGCTTGCTGGTGATAGGTTTCCTACTCGAGCATGTTGTGTTGTTGTGGAATATCTCCCGGGTGGGACGCTAAAACAGTACTTGATAAGGAATAGGCGTAAAAAACTGGCCTTTAAGATTGTAATTCAACTTGCCTTGGATCTCTCCAGAGGTTTGAGCTACCTGCATTCCAAGAAGATTGTGCATCGTGATGTCAAAAGTGAAAATATGTTACTAGATGCACAAAGAACGTTAAAAATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTCAAAATCTAAGGGAAATGACCGGTGAAACTGGTACTCTTGGGTACATGGCCCCAGAGGTCCTCGATGGCAAGCCTTACAATAGAAGATGTGATGTCTACAGCTTTGGCATATGTTTATGGGAAATCTACTGCTGTGATATGCCTTATCCAGATCTTAGCTTTGCTGAAGTTTCATCAGCAGTTGTTCGACAGAATTTGCGGCCAGAAATCCCCAGATGTTGCCCGAGTTCTCTAGCAAACATAATGCGAAAATGCTGGGACGCAAATGCAGAAAAACGGCCTGACATGAATGAGGTGGTGAAGATGTTGGAAGCAATTGATACAAGCAGAGGAGGAGGGATGATACCTGAAGACCAGACTCCAGTCTGTTTCTGCTTCAGCAATGTCCGTGGTCCATAA 1371 44.86 MNGTPRFSLLSQQILAPILFDSVFIRFYLLPPFLLQYWIGSGITPPDHIPPEALPLTCTLHLHQLMPYALQRLEIGGAMIAEKSDCKESSTGSKVKGTGSLSNKDKIFRADKIDLKSLDIQLEKHLSRVWSRSIDSQRPKEEWEIDLSKLDIKHVVAHGTYGTVYQGTYDNQDVAVKVLDWGEDGIPTTAETAALRASFRQEVAVWHKLDNPNVTKFIGASMGTSNLKVPTQSLPLAGDRFPTRACCVVVEYLPGGTLKQYLIRNRRKKLAFKIVIQLALDLSRGLSYLHSKKIVHRDVKSENMLLDAQRTLKIADFGVARVEAQNLREMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFAEVSSAVVRQNLRPEIPRCCPSSLANIMRKCWDANAEKRPDMNEVVKMLEAIDTSRGGGMIPEDQTPVCFCFSNVRGP* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5521760 5528578 - Vvi5g538 Vvi5g538 786680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g538 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 73 450 - -
Vvi5g538 456 PRINTS Tyrosine kinase catalytic domain signature 250 263 IPR001245 GO:0004672|GO:0006468
Vvi5g538 456 PRINTS Tyrosine kinase catalytic domain signature 288 306 IPR001245 GO:0004672|GO:0006468
Vvi5g538 456 PRINTS Tyrosine kinase catalytic domain signature 354 376 IPR001245 GO:0004672|GO:0006468
Vvi5g538 456 PRINTS Tyrosine kinase catalytic domain signature 398 420 IPR001245 GO:0004672|GO:0006468
Vvi5g538 456 Gene3D Phosphorylase Kinase; domain 1 139 233 - -
Vvi5g538 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vvi5g538 456 ProSiteProfiles Protein kinase domain profile. 150 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g538 456 Pfam Protein tyrosine and serine/threonine kinase 151 427 IPR001245 GO:0004672|GO:0006468
Vvi5g538 456 SMART serkin_6 150 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g538 456 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Vvi5g538 456 Gene3D Transferase(Phosphotransferase) domain 1 253 438 - -
Vvi5g538 456 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 73 450 - -
Vvi5g538 456 CDD STKc_MAP3K-like 156 427 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g538 Vvi7g67 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76668 PF07714 PK_Tyr_Ser-Thr 6.50E-60 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g538 - - vvi:100259653 777.319