Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g539 ATGGACACCCCTGAGAGGAACCAGATCGCGGCTCCCATTTCTAAATTCGAGGACTCTCCTGTCTTTAACTTCATCAACAGTCTTTCTCCTATTAAGCCTGTCAAGTCCGCACACATTGCTCAGACGTTTAACTCACTCAGTTTTGTATCCCTTCCGTCCATTTTCACTTCACCCCATGTCAGTTCCCACAAGGAATCTAGGTTCTTGAGAAGGCATAATTTCTCAGACCCGTCAAAGCCCGAGTTTTCTTCTGTAAATGGAAATAAAGTCAGTACAAATGAAGAGGTTATGGATGCCGATCATCCTGACTGTGACCCAACACCTTGTGGGGGAATGTGTCAGATTGAGCAAAAAAAGGAAGAGGCAGGCTGTGACTGGGAGAGTTTGATTTCAGACGCTGCAGACCTTTTAATTTTTGATTCACCTGATGACACGAGGGCTTTTAAGGGTCTAATTCAGAAATCATTAGATCCTGGGACAAGTGTTTGTGCTTCTCTTGGATCGCAGTTTTCACAGGATGATGTTAGTGATTTGCAGAAAAAGCAATTTGTTGGTTCAGATGATTCTGGTGAACATGAAACAGATGACCCTTCCACTCAACCTGAAGAAGCCAGCAAGCTGAATGGAATGGACCAGAAACAAGAGAACCTTGCTAATACTTCTTTCAAGGACTGCATGGGTAGCAATGCAAGTGGGGAAATGGATAATGAGGGTGGAACAAGCATTCCAGTCCCTTCTAAGACTCTTTCCAATTTGCATCGTGGTATGAGAAGACGCTGTCTAGTTTTTGAGATGGCAGGAGTTCGTAGAAAAAACATGGATGATGGTTCAAATTGTAGTTCTTCCATGTTATCACAATCTGATGGAACGTTTGTGCCTAATGACAAGCAACTAGTACCTCTTAAACCTGGGAATGATTCTTCACGACGCATTCTACCTGGAATAGGTTTGCACTTAAATGCTCTTGCTACAACTTCAAAGGACTACAACATTGTCAAGCATGAAACTTTAACTTCAGGAAGGCAGTTAATAAGTGTGCCAAGCTCCTCTGGCTCATATCTTTCTACAATAGAAGGTCAAGAACCTGTAAATAAATCTTTGGCTTTAAACTCTTCAGACAGAGAGACAGACCCTGCTGAAAATGGATTTCAGGCTCTGGAAGATGCTTCTCAGGCATCTGCATATGCGATTAGTGAAGAGCTCAATCAGAGTAGCCCCAAAAAAAAGAGGCGTAGGTTGGAACATGGTGGAGAAACTGAGGGCTGCAAGCGCTGTAACTGCAAGAAATCTAAATGCTTGAAGCTTTACTGTGAATGCTTTGCTGCTGGTGTCTACTGTGTAGAGCCATGTTCATGCCAAGAATGCTTTAACAAACCTATTCATGAAGATACTGTTCTTGCAACTCGCAAGCAGATCGAATCTCGGAATCCACTAGCATTTGCTCCCAAAGTGATTAGGAGCTCTGATTCTTTGCCGGAAGTTGGGGATGAACCTAGCAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAGAAATCAAGTTGCCTAAAGAAATATTGCGAATGCTATCAGGGTGGTGTTGGATGCTCCATTAACTGCCGGTGTGAAGGGTGTAAGAATGCATTTGGTAGAAAGGACGGTTCTGCTCTTATAGGAATGGAAGCAGAACTAGAAGAAGAAACAGAGACATTAGAGAAGAGTGTGGTGGACAAGAATTTGCAGAAATCAATTGTACAGAATGATGAAGAATATCTGGATTCTGCTCTTCCAGTGACACCATTGCGCACTTGCAGACAACCATCTCAATTGTCATTTCCCTCAAAGACCAAACTACCACGATCGTCTTTTCTCACTATTGGGTCCTCATCTGGGTTGCATACTAGCCAAATATTTGGAAAGCCAAATTTTCCACAACCTCAGTCCAAGTTTGAGAAGAAATTCCAAACCATCCCAGAAGATGAGATGCCTGAGATTCTTCGGGGCAATTGCTCTCCCACCAGTAGTAGCATCAAGACTGCTTCTCCCAACAGTAAGAGGGTGTCTCCTCCTCACTGTGATTTCGGATCGTCCCCTAGTCGAAGGAGTGGCCGGAAGTTGATACTGCAATCCATCCCATCATTTCCTTCTCTTACACCTCAGCATTAA 2154 43.55 MDTPERNQIAAPISKFEDSPVFNFINSLSPIKPVKSAHIAQTFNSLSFVSLPSIFTSPHVSSHKESRFLRRHNFSDPSKPEFSSVNGNKVSTNEEVMDADHPDCDPTPCGGMCQIEQKKEEAGCDWESLISDAADLLIFDSPDDTRAFKGLIQKSLDPGTSVCASLGSQFSQDDVSDLQKKQFVGSDDSGEHETDDPSTQPEEASKLNGMDQKQENLANTSFKDCMGSNASGEMDNEGGTSIPVPSKTLSNLHRGMRRRCLVFEMAGVRRKNMDDGSNCSSSMLSQSDGTFVPNDKQLVPLKPGNDSSRRILPGIGLHLNALATTSKDYNIVKHETLTSGRQLISVPSSSGSYLSTIEGQEPVNKSLALNSSDRETDPAENGFQALEDASQASAYAISEELNQSSPKKKRRRLEHGGETEGCKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKPIHEDTVLATRKQIESRNPLAFAPKVIRSSDSLPEVGDEPSKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNAFGRKDGSALIGMEAELEEETETLEKSVVDKNLQKSIVQNDEEYLDSALPVTPLRTCRQPSQLSFPSKTKLPRSSFLTIGSSSGLHTSQIFGKPNFPQPQSKFEKKFQTIPEDEMPEILRGNCSPTSSSIKTASPNSKRVSPPHCDFGSSPSRRSGRKLILQSIPSFPSLTPQH* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5537466 5545153 + Vvi5g539 Vvi5g539 786681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g539 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 111 717 - -
Vvi5g539 717 SMART CXC_2 420 461 IPR033467 -
Vvi5g539 717 SMART CXC_2 506 547 IPR033467 -
Vvi5g539 717 MobiDBLite consensus disorder prediction 183 200 - -
Vvi5g539 717 MobiDBLite consensus disorder prediction 222 248 - -
Vvi5g539 717 MobiDBLite consensus disorder prediction 661 717 - -
Vvi5g539 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 111 717 IPR044522 GO:0003700
Vvi5g539 717 MobiDBLite consensus disorder prediction 183 209 - -
Vvi5g539 717 MobiDBLite consensus disorder prediction 698 717 - -
Vvi5g539 717 MobiDBLite consensus disorder prediction 664 682 - -
Vvi5g539 717 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 423 458 IPR005172 -
Vvi5g539 717 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 509 544 IPR005172 -
Vvi5g539 717 ProSiteProfiles CRC domain profile. 421 546 IPR005172 -
Vvi5g539 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 98 - -
Vvi5g539 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 98 IPR044522 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g539 - - - vvi:100261336 1407.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g539 Vvi14g467 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14856 PF03638 TCR 1.80E-11 No_clan Vvi TF