Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g541 ATGGCAACCCTGTCACATTCCGATTCCAGGCGCCGATATTCATGGTGGTGGGACAGCCACATCAGTCCAAAGAATTCAAAATGGCTTCAGGAAAATCTTACAGATATGGATGTCAAAGTGAAAGCAATGATCAAGCTCATTGAAGAAGATGCAGATTCCTTTGCACGGAGGGCAGAAATGTACTACAAGAAGCGTCCAGAACTAATGAAACTGGTTGAGGAGTTTTACCGAGCTTATAGAGCATTAGCTGAACGGTATGATCATGCAACAGGGGAGCTACGCCAGGCCCATCGAACCATGGCAGAAGCATTTCCTAACCAAGTACCTTATGTACTGGCTGATGACTCACCCTCAGTTTCTACAACCCCTGGGCCCGAGCCACACACACCTGAAATGCCGCATCCGATTCGTGCATTGATTAAAAAAGGGCTCAGTGTTCAGATAGAAGAGCAAGCACACAGTTTGCAAGGTGGGCTCTCTCAGTTATCAAGTGAGAATCGGACTCTCAAACTGCAAGTTCTTTCTGAATCTGAGCCACGGAGTGAAAGAGCTGACGGTAAAGTTGAAGCACTTAGGCAAGCTCTTGCTAAATTAACGGAAGAGAAAGAAGCTTCAGTTCTCAAGTACGAGCAGTGCTTGGAGAAAATAGCTAAGCTGGAGGGTGAAATCAAACGTGCCCAAGAGGATGCCAAACGACTCAACTTTGAGATTCTTATGGGGGCAGCAAAACTAAAGAGTGCTGAAGAACAGCGAGTTCAGTTGGAGACATCAAATCAATCTCTGCAGTTAGAAGCAGACAAGCTGGTGCAGAAAATAGCAATGAAAGATCAAGAACTTTCAAAAAGGCATGAGGAATTGGAGAAACTTCAGATCCATATGCAGGATGAGCACTTGCGATTTGTTCAGGTTGAGGCCACTCTCCAGAACTTGCAGAATTTGCACTCTCAATCGCAGGAGGAGCAGAAAGCTCTAGCTTTGGAGCTGGAAACTGGGCTTCAAAGCTTAAGGCATTTCAGGAGTCCTGTGAGCTTCTTCAGGGAGAAAAATCCACTCTCCTTGTTGAGAAAGCCACCCTGTTTACAGATTTGGAAGAAAACTATGCTGGCTTACAAAAGGAGAAAGCATCCACACTTTGCCAAGCCCGACTGGCATCTCTGGAAAACCATATTTATCACCTGCAGGAAGAAAATCCTTGTCTTGCAGAAATTTATACAAGATATGGAAGAAAAGAACTACTCTCTATTGATTGAGTGTCAGAAACATATTGAGGCATCCAGATTGTCAGAGAAACTGATTTCAGAGTTGGAGACTGAAAATCTTGAACAACAGGTGGAAGCAGAATTCCTGTTAGATGAAATTGAAAAGCTAAGAAGGGGGATCTGTCAAGTGTTCAAGGCTCTTCAGATTAATTTAGATAATGTGCAGGAAGAGAAGATTGAACAAGAGCAAATACTTCTGCGGCATATTATAGGGAATATGGAGGACATGAAAAGTTCTCTCCTGAAAAGCGAGGATGAGAAGCAGCAACTAGAGGTTGAGAACTCCGTTCTTTTAACTGTACTTCAGCAACTGAGAATGAACCGGCAGTTGGGGCTAGAAGTGAGCAAGAGAGACCACCTGGAGGGAGAAAACAGTGCTATTCTCCATGAAACTGTTGCCCTCAGTAACCTGTCTTTGGTTTTGAACAACTTCTGGTCTGAGAAGGTAGGGGAACTAAAAGCACTTGCTGAAGATTTTGACAATCTCCATGGGGTTAACAGTGACCTTGGGGGGGAAGTGGGAATTTTGACAGAGAAATTGGGACTGAAAGAAACTGAAAATTTACATCTGAAAGGGCTTGTTGAGAAGTTGGACAAGGAGCTGCATGAAGTTACAAATTTAAGTGATCAGTTGAACAATCAACTTTCAGTTGGAAAAGATTTGCTAAGCCAGAAGCAAAAGGATCTTTCAGAAGCAAAACAGAAGCTCAAAGCTGCACAGGACTTGACCGCAGAATTATTTGGCACTATGAATGGGAACTTGGAGTCTGAATTGGATATGTTACATGAAGAAATTGAAGAATATAGAATCAGAGGAGAGAAGTTGAATTCAGAGCTTCATGAAAGAAGCAATGACTTTGAACTATGGGAGGCTGAAGCTACAACATTCTACTTTGATCTTCAGGTTTCCTCTGTCCGTGAAGTTCTGTTTGAAAATAAGGTGCATGAGCTTACTGGAGTGTGTGAGAATCTTGAGGATGAAAGTGCTTCAAAAAGTATCAAGATTCAACAGATGAGAGAAAGGGTTAGCTTCTTGGAAAGTGAAATTGGAGGACTGAAAGCCCAGTTGTCTGCATATGGTCCTATCATAGTTTCTCTGAGAGATAACATAGCATCCCTTGAGCACAATGCCCTCTTCCGATCAAAGCTTCAAGTAGCTGACAATCAGAAACCTAAGGATATGGAAATGGTAGTTCATGAAAAGAGCTCTCAAGAGCTGAGAGAAGATCAAGGCACTCCGATACCTGATGGAATTTCAGATTTGCAGGAGATACAGACCAGAATTAAAGCAGTTGAAAAGGCAGTGATTGAAGAGGCTAAGCCAGAAATTTCTAAAGTGAGGCATGGAATTCTGATGAAAGATATTCCCCTTGATCAAGTCTCAGATTGTTCCTTATATGGAAAAAGCAGGAGAGATGGCGTTACTCACTATCATTTTGAGGATGTGAAGCAGAAGAGTGCACGGCCATCTTCAGAACTGCAGGTTGAGAAAGAACTGGGTATTGACAGGCTAGAAGTATCTACAAGTAGCATGCAGCCAAATCAAGATGGGAACAAGAGAAAAATCTTGGAGAGACTTGCTTCTGACGCTGAGAAATTGATGAGTCTTCAGATAGTAGTGCAGGATTTGCAAAGGAAGATGGCAACCACAAAGAAGAGCAAAAGGGCTAAGTCTCTTGAATACGGAACACTGAAGGAACAGCTGCAGGAAGTTGAGGAAGCTGTAGCGCAGCTGGTGGATATCAATTGCCAACTGACAAGGAATATGGATGAGAGTGCATCATCCTCAGATGGAATGGCTTCGCCAGAGTTGCAGGAGGCTGGAAATGTCCAGAGAAAGAAAGTAACAGAACAGGCACGAAGAGGGTCTGAAAAGATAGGAAGGCTGCAGTTGGAAGTGCAGAAAATCCAGTATGTGTTGTTGAAACTGGACGATGAAAAGAAAAGCAGCAGGAAATACAGATTTTTGGCTGGTAGGACAAGCATTCTTCTGAAGGACTTCATTTATACTGGCAGGAGAAGAACCGAAAGGCGAAAGAAGGCATGTGGCTGTTGGAGGCCTTACAATAATGTGGACTGA 3339 43.22 MATLSHSDSRRRYSWWWDSHISPKNSKWLQENLTDMDVKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATGELRQAHRTMAEAFPNQVPYVLADDSPSVSTTPGPEPHTPEMPHPIRALIKKGLSVQIEEQAHSLQGGLSQLSSENRTLKLQVLSESEPRSERADGKVEALRQALAKLTEEKEASVLKYEQCLEKIAKLEGEIKRAQEDAKRLNFEILMGAAKLKSAEEQRVQLETSNQSLQLEADKLVQKIAMKDQELSKRHEELEKLQIHMQDEHLRFVQVEATLQNLQNLHSQSQEEQKALALELETGLQSLRHFRSPVSFFREKNPLSLLRKPPCLQIWKKTMLAYKRRKHPHFAKPDWHLWKTIFITCRKKILVLQKFIQDMEEKNYSLLIECQKHIEASRLSEKLISELETENLEQQVEAEFLLDEIEKLRRGICQVFKALQINLDNVQEEKIEQEQILLRHIIGNMEDMKSSLLKSEDEKQQLEVENSVLLTVLQQLRMNRQLGLEVSKRDHLEGENSAILHETVALSNLSLVLNNFWSEKVGELKALAEDFDNLHGVNSDLGGEVGILTEKLGLKETENLHLKGLVEKLDKELHEVTNLSDQLNNQLSVGKDLLSQKQKDLSEAKQKLKAAQDLTAELFGTMNGNLESELDMLHEEIEEYRIRGEKLNSELHERSNDFELWEAEATTFYFDLQVSSVREVLFENKVHELTGVCENLEDESASKSIKIQQMRERVSFLESEIGGLKAQLSAYGPIIVSLRDNIASLEHNALFRSKLQVADNQKPKDMEMVVHEKSSQELREDQGTPIPDGISDLQEIQTRIKAVEKAVIEEAKPEISKVRHGILMKDIPLDQVSDCSLYGKSRRDGVTHYHFEDVKQKSARPSSELQVEKELGIDRLEVSTSSMQPNQDGNKRKILERLASDAEKLMSLQIVVQDLQRKMATTKKSKRAKSLEYGTLKEQLQEVEEAVAQLVDINCQLTRNMDESASSSDGMASPELQEAGNVQRKKVTEQARRGSEKIGRLQLEVQKIQYVLLKLDDEKKSSRKYRFLAGRTSILLKDFIYTGRRRTERRKKACGCWRPYNNVD* 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5552864 5561875 + Vvi5g541 Vvi5g541 786683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g541 1112 Coils Coil 974 1004 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 180 337 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 858 892 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 670 859 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 894 1110 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 396 528 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 142 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 538 671 - -
Vvi5g541 1112 Coils Coil 610 634 - -
Vvi5g541 1112 Coils Coil 244 278 - -
Vvi5g541 1112 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Vvi5g541 1112 Coils Coil 671 698 - -
Vvi5g541 1112 Coils Coil 493 513 - -
Vvi5g541 1112 Coils Coil 639 662 - -
Vvi5g541 1112 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Vvi5g541 1112 Coils Coil 300 327 - -
Vvi5g541 1112 Coils Coil 741 775 - -
Vvi5g541 1112 Coils Coil 181 236 - -
Vvi5g541 1112 MobiDBLite consensus disorder prediction 1011 1037 - -
Vvi5g541 1112 SUPERFAMILY Tropomyosin 573 795 - -
Vvi5g541 1112 Coils Coil 432 452 - -
Vvi5g541 1112 Coils Coil 464 484 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 538 671 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 396 528 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 1 142 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 858 892 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 894 1110 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 670 859 - -
Vvi5g541 1112 PANTHER PROTEIN NETWORKED 4A 180 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g541 - - - vvi:100254535 1021.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g541 Vvi7g65 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44