Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g543 ATGGCCACTCGCAAGAGCTCTCTCATCACCACTGGTCTCACACTTTTTTCTATCAAACGCTTGGATGCCAAAGTCCTCCTGACTTGGTCTCATAATTCCTTGAGACAAACGGGTCACTGTATCACTGTGCCTTCCTCCTTGCCTTCAAAATCAGCCAATCTCCGTAAAATAATGGCCTATAATAATCTAAAACCAAAAATGCTGAGAACCGTGTTTTTGCCAAATACCAAACGCCCTAAGAAGCAAACTCCAGGTCAGTGTGGCATGTCCTCTAAAATGAAGAACCCATATATGAGTTCAGCCCTCTGGATCATTTTCTCACTCTTCCTCTCCTTCTCTGCACCCTCTCACCAAGATTCTTATTCTCCTCCACCTCTCCCAAACCCTAGAATCCTAAATGCTTACACAGCTCTCCAAGCATGGAAACATGTGATACTCTCTGACCCCAAGAACTTTACCTCAAACTGGTGTGGCTTTGACCTTGGTCTCCTCACCGACCTCGCTCTCTTTCACATCAACTCCAATCGCTTCTGTGGAACCTTGCCCGATAGTTTTCGCCATCTTCGTCTTCTTTACGAGCTCGATATTAGCAACAACCGATTCAAAGGCCAGTTTCCTTCTGTGGTTCTCTGTCTTCCTTCACTCAAATTTCTTGACATTCGGTACAATGAATTCGAGGGTGACATCCCAACGGGCCTTTTCGACTTGAAACTCGATGCTATATTCGTTAACAACAACAAGTTTAAGTCATCTCTGCCGGGAAATATCGGAAACTCCCCTGTTTCTGTTATTGTGTTTGCGAATAACAACCTTAATGGTTGCCTTCCATCGAGTTTGTCGAAAATGGCGAAAACACTCAATGAACTCATAATCACGAATGCGGGTTTAAAAGGTTGTTTATCACCAGAGATTGGGTTGTTGAAAAATGTTACAGTTTTTGATGTAAGCTCAAACGAGTTGGTAGGGCCGTTGCCGGAGACTATAGGGGAGATGAAGAGCTTGGAGCAGCTGAACGTAGCCCATAACAAACTATCCGGGGAGATTCCGGAGACCATATGCTCTTTACCTAACTTGGAGAATTTCACCTACTCCTACAATTACTTCTGCGGTGAACCACCGACATGCCTCAAGTTGCCGGCAAATGATGATCAGAAAAACTGTATACCGGATAGGCCGATGCAGAGGTCACCGGAGGAATGCGCAGCTTTCCTTGCACAACCTGTTGACTGCGGTGCCTTTGGCTGCTTACCCAGAAGGAAGATGCGTCGGTACGTGGATTTTTCTCCCTTCTCAAAGGATTGA 1302 45.47 MATRKSSLITTGLTLFSIKRLDAKVLLTWSHNSLRQTGHCITVPSSLPSKSANLRKIMAYNNLKPKMLRTVFLPNTKRPKKQTPGQCGMSSKMKNPYMSSALWIIFSLFLSFSAPSHQDSYSPPPLPNPRILNAYTALQAWKHVILSDPKNFTSNWCGFDLGLLTDLALFHINSNRFCGTLPDSFRHLRLLYELDISNNRFKGQFPSVVLCLPSLKFLDIRYNEFEGDIPTGLFDLKLDAIFVNNNKFKSSLPGNIGNSPVSVIVFANNNLNGCLPSSLSKMAKTLNELIITNAGLKGCLSPEIGLLKNVTVFDVSSNELVGPLPETIGEMKSLEQLNVAHNKLSGEIPETICSLPNLENFTYSYNYFCGEPPTCLKLPANDDQKNCIPDRPMQRSPEECAAFLAQPVDCGAFGCLPRRKMRRYVDFSPFSKD* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5569272 5571487 - Vvi5g543 Vvi5g543 786685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g543 433 Gene3D Ribonuclease Inhibitor 132 387 IPR032675 -
Vvi5g543 433 SUPERFAMILY L domain-like 136 379 - -
Vvi5g543 433 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 108 160 - -
Vvi5g543 433 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 160 417 - -
Vvi5g543 433 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Vvi5g543 433 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 108 160 - -
Vvi5g543 433 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 160 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g543 - - - vvi:100251086 664.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37