Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g545 ATGTCAACTTTCATATTCCTGGTGTGTTCCATGCTCACTGGTTTCTCTAGAAAGTTAGCTGGTCCATTGTTAACAGTACTTATTGATACAGTTCGAGTTGGCTTGACACTAGCTAGCTATCATATGGGTAACTCTGATTACCACACCCCGCGTGGTGTTGCAGTTCCTCCGCCAAAGCCATTCTGTTGGGCTGTGAGGACAGCTCTCAAAGAGACTTTCTTTCCTGATGACCCTTTTAGGCAATTCAAGAACCAGCCACCTTCTAGGAAGTTTGTGCTGGGGTTACAGTACTTGATGCCAATCCTTGAATGGGCACCTCGCTACACTTTTCAGTCCTTCAAATCTGATTTAGTTGCGGGGATTACTATTGCCAGTCTTGCAGTTCCTCAGGGGATAAGTTATGCAAATTTAGCAAGCTTGCCACCCATTGTTGGATTATATTCAAGCTTTGTACCTCCACTGATCTACGCCATGTTCGGAAGCTCCAGAGATGTGGCAGTGGGGACTATAGCTGTTGCATCACTTCTCTTAACTTCCATGATTGGGGGTGTGGTTAATCCATATGAGAACCCAAAGCTTTATTTTCAGCTGGCTGTCACCGCAACCTTCTTTTCTGGAGTTCTTCAAACTGCTCTGGGATTGTTAAGGCTTGGGTTTATCGTGGACTTTCTGTCACATGCAACAATAGTGGGATTCATGGGGGGAGCAGCCACAATCGTTTGTTTGCAGCAACTAAAAGGGATGCTTGGTCTCGTTCATTTTACTCGTGGGACAGATATGGTATCTGTCCTCAAATCCGTCTTTACTCAAGTACACCAGTGGAGATGGGAAAGTGCTGTGTTGGGCTGCCTTTTCCTCTTCTTCCTCCTCCTTACCAGATATTTTAGCAAGAGAAAGCCAGCCTTCTTCTGGATAAACGCCATGGCGCCTTTGATGTCTGTAATTTTGGGAAGCATTCTAGTCTATCTGACCCATGCTGAGAAACACGGCGTCCAAGTGATTGGGCACCTGAAGAAAGGGCTGAATCCACCATCTCTGTCTGATCTGGCTTTTGGGTCACCATATCTCGTGACAGCTATCAAAACAGGAGCCGTCACTGGAATCATAGCCCTAGCTGAAGGAATTGCAGTTGGGAGAAGCTTTTCCATGTTCAAGAATTATCACATTGATGGGAATAAAGAAATGATCGCTTTTGGAATGATGAACATTGCAGGCTCTTGCACTTCTTGCTACTTGACCACAGGACCATTTTCCCGAACAGCAGTGAATTTCAATGCAGGATGCAAGTCAGCGGTATCCAACATAGTCATGGCCACAGCAGTTATGATAACCCTGTTATTCCTAACTCCGTTGTTCCATTACACTCCCCTGGTGGTGCTCTCATCCATAATCATCGCTGCCATGCTCGGCCTGATAGACTATGAGGCTGCCATCCATCTATGGAAAGTCGACAAATTCGATTTCGTTGTGTGCATGAGTGCATACATAGGTGTGGTCTTCGTCAGTGTTGAAATCGGCTTAACCATAGCGGTCACCATGTCCATGCTAAGGCTGCTGCTATCCTTGGCAAGGCCGAGGACTCACGTTCTTGGCAACATTCCCAACACGATGACATACAGAAGCATTGATCAGTACCCAAATGCGAACACTGTTCCCGGAATGCTCATTCTTCATATTGACGCCCCCATCTACTTTGCCAATTCTAACTACCTAAGAGAAAGGATCACGAGATGGATATATGAGGAGGAAGATAGGGTAAAATCCTGTGGAGAGGCCAACTTGCACTATGTCATATTAGATATGAGCGCGGTTGGTAGCATTGATACAAGTGGGATGAGCATGCTTGATGAGGTGAAGAAGGATCTTGACAAAAGGGGTCTCAAGCTTGTATTAGCAAACCCTGGAAGTGAGGTGATGAAGAAGCTAGACAAGACAGAGTTCATCCAAAACATTGGCCAAGAATGGATCTATCTGACAGTGGGAGAGGCCGTGGGAGCATGCAACTTTATGCTGCATACATGCAAGCGAACTCCCCCCACCCTCAGCATGCCTCCGGCTGTTGAACTCACTGCACAAGATAACGTGTGA 2088 46.26 MSTFIFLVCSMLTGFSRKLAGPLLTVLIDTVRVGLTLASYHMGNSDYHTPRGVAVPPPKPFCWAVRTALKETFFPDDPFRQFKNQPPSRKFVLGLQYLMPILEWAPRYTFQSFKSDLVAGITIASLAVPQGISYANLASLPPIVGLYSSFVPPLIYAMFGSSRDVAVGTIAVASLLLTSMIGGVVNPYENPKLYFQLAVTATFFSGVLQTALGLLRLGFIVDFLSHATIVGFMGGAATIVCLQQLKGMLGLVHFTRGTDMVSVLKSVFTQVHQWRWESAVLGCLFLFFLLLTRYFSKRKPAFFWINAMAPLMSVILGSILVYLTHAEKHGVQVIGHLKKGLNPPSLSDLAFGSPYLVTAIKTGAVTGIIALAEGIAVGRSFSMFKNYHIDGNKEMIAFGMMNIAGSCTSCYLTTGPFSRTAVNFNAGCKSAVSNIVMATAVMITLLFLTPLFHYTPLVVLSSIIIAAMLGLIDYEAAIHLWKVDKFDFVVCMSAYIGVVFVSVEIGLTIAVTMSMLRLLLSLARPRTHVLGNIPNTMTYRSIDQYPNANTVPGMLILHIDAPIYFANSNYLRERITRWIYEEEDRVKSCGEANLHYVILDMSAVGSIDTSGMSMLDEVKKDLDKRGLKLVLANPGSEVMKKLDKTEFIQNIGQEWIYLTVGEAVGACNFMLHTCKRTPPTLSMPPAVELTAQDNV* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5595929 5622085 - Vvi5g545 Vvi5g545 786687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g545 695 Gene3D STAS domain 524 669 IPR036513 -
Vvi5g545 695 TIGRFAM sulP: sulfate permease 100 663 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi5g545 695 CDD STAS_SulP_like_sulfate_transporter 545 660 - -
Vvi5g545 695 Pfam Sulfate permease family 113 493 IPR011547 GO:0016021
Vvi5g545 695 PANTHER BNAA04G05880D PROTEIN 44 678 IPR030311 GO:0008272|GO:0009507|GO:0015116
Vvi5g545 695 SUPERFAMILY SpoIIaa-like 547 667 IPR036513 -
Vvi5g545 695 PANTHER SULFATE TRANSPORTER 44 678 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi5g545 695 Pfam STAS domain 545 663 IPR002645 -
Vvi5g545 695 ProSiteProfiles STAS domain profile. 544 667 IPR002645 -
Vvi5g545 695 ProSitePatterns SLC26A transporters signature. 142 163 IPR018045 GO:0008271|GO:0008272
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g545 Vvi7g64 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g545 K17471 - vvi:100244269 1286.94