Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g546 ATGCCCACCTCAAAATTCTCACTGGCCATCATCAATCCCCACATCATGCCATGCTTGCCACCCTTTGGCCCTGACCACGACGTTTCATCACATCCTTCTTTCCTTGTCCCCAGCAATTTTCGTCTGCATTTGTCCCTTACATTCTTTATTTCGCCTAAAACTCTCCGGAGTCGGCAGAAATACCTTCCACCAAAATTGGTGCTCTCCCGGGTTGGCAACTGTCAAATCTCTGAAACTGATTTGAAAACCAAGGATCGAATGGGTAACTCCAATTGTGAAACCCCACGTCGAGTTGCTGTCCCTCCAAAAAAATCTTTTTCTGCTTCCTTGAGTTCAACTTTCAAAGAGACTATCTTTCCCGATGACCCTTTTAGGCAATTCAAGAACCAGTCTCCTTCCAGGAAGTTTGTATTAGGGTTACAATACTTGGTACCTATCTTCGAGTGGGCTCCTCGCTATACTTTTGAGTTCTTCAAAGCTGATTTAATAGCGGGAATTACTATTGCTAGTCTTGCCGTTCCTCAAGGGATAAGTTATGCAAAATTAGCGAACGTGCCCGCCATTCAGGGATTATATTCGAGCTTTGTGCCTCCCTTGATATACGCCATGTTCGGAAGCTCCAGAGACATGGCAGTGGGTACTAATGCCGTTGGATCACTCCTCCTAAGTTCCATGATTGGGAGAGAGATCAATCCAACTGAGAACCCAAAGATTTATCTTCAGGCAGTCTTCACTGCCACGTTCTTTGCTGGAGTGATCGAAACTTGCCTGGGGTTCTTAAGACTAGGGTTTCTCGTGGACTTTCTGTCACATGCAGCAATAGTGGGGTTCATGAATGGAGCAGCCATAATTGTTTGTTTACAGCAGCTGAAAGGTATCCTGGGTCTGGTTCATTTTACACTAGAGACCGACATCGTATCGGTACTGCGAGCCGTATTCACTCAAACGCACCAGTGGAGATGGGAAAGTTGTGTCTTGGGCTGTGTTTTTCTATCATTCCTCATCCTCACAAAATACTATAGCAAGAGAAAACAAGCCTTCTTCTGGATAAACGCCATGGCGCCTCTAACGTCTGTGATTTTGGGAAGCATTCTAGTCTATATGACCCATGCTGAGAAACATGGTGTCCAAGTGATTGGGCACTTGAAGAAAGGGTTGAATCCACCATCTGTGTCTGAACTGGGTTTTGGGTCACCATATCTGATGACAGCCATTAAAGCAGGAGCCACCATTGGGATCATATCCCTAGCTGAAGGAGTCGCAGTGGGAAGAAGCTTCGCCATGTATAAGAACTATCACATTGACGGGAACAAAGAAATGATCGCATTTGGAATGATGAATCTCGTGGGCTCTTTAACTTCTTGCTACTTGACCACAGGACCCTTTTCGCGGACAGCAGTGAACTTCAATGCAGGTTGCAAGACAGCAGCTTCCAACATTGTCATGGCAACAGCAGTGATGATGACACTACTATTCCTGACCCCGCTCTTCCATTACACTCCTCTTGTGGTGCTCGCCTCCATAATCATTGCTGCCATGCTCGGCCTGATAGACTATGGGGGTATCATCCATCTCTGGACGATCGACAAATTCGACTTCTTTGTGAGCATAAGTGCATTTCTTGGTGTGGTCTTCGGCAGTGTTGAAATTGGCTTAATTATTGCGGTCACCATTTCCATGCTCAGGTTGCTTCTATCCTTGTCAAGGCCAAGGACTTATGCTCTAGGCAACATTCCTAACTCCATAACCTACAGAAGCATTGAACAGTATCCAGCTGCTGCTAATGTTCCGGGAATGCTCATTCTCCGTATTGATGCTCCAATCTACTTTGCTAATACTAGCTACTTAAGGGAAAGGATATCGAGATGGATATATGAGGAGGAAGACAGGCTAAAATCTGCGGGAGAAACCAGCTTACATTATGTCATATTAGATATGAGTGCTGTGAGTAGCATTGATGCAAGTGGAATCCACATGCTTGAAGAAGTCAGGAAGAATGTCGATAGAAGGGGTCTCCAGCTTGCATTAGCAAATCCTGGAAGTGAAGTGATGAAGAAGCTGGACAAGTCGAAGATGATTGAAAAAATTGGAGAGGAATGGATGTATTTGACGGTGGCAGAGGCAGTGGGAGCCTGCAACTTCATGCTACACTCATGCAAGTCCACTTCTGCGGCTCTCACAAATCCTGCCGCAGTTGAACCCAACACATATGATTACGTGTGA 2223 45.57 MPTSKFSLAIINPHIMPCLPPFGPDHDVSSHPSFLVPSNFRLHLSLTFFISPKTLRSRQKYLPPKLVLSRVGNCQISETDLKTKDRMGNSNCETPRRVAVPPKKSFSASLSSTFKETIFPDDPFRQFKNQSPSRKFVLGLQYLVPIFEWAPRYTFEFFKADLIAGITIASLAVPQGISYAKLANVPAIQGLYSSFVPPLIYAMFGSSRDMAVGTNAVGSLLLSSMIGREINPTENPKIYLQAVFTATFFAGVIETCLGFLRLGFLVDFLSHAAIVGFMNGAAIIVCLQQLKGILGLVHFTLETDIVSVLRAVFTQTHQWRWESCVLGCVFLSFLILTKYYSKRKQAFFWINAMAPLTSVILGSILVYMTHAEKHGVQVIGHLKKGLNPPSVSELGFGSPYLMTAIKAGATIGIISLAEGVAVGRSFAMYKNYHIDGNKEMIAFGMMNLVGSLTSCYLTTGPFSRTAVNFNAGCKTAASNIVMATAVMMTLLFLTPLFHYTPLVVLASIIIAAMLGLIDYGGIIHLWTIDKFDFFVSISAFLGVVFGSVEIGLIIAVTISMLRLLLSLSRPRTYALGNIPNSITYRSIEQYPAAANVPGMLILRIDAPIYFANTSYLRERISRWIYEEEDRLKSAGETSLHYVILDMSAVSSIDASGIHMLEEVRKNVDRRGLQLALANPGSEVMKKLDKSKMIEKIGEEWMYLTVAEAVGACNFMLHSCKSTSAALTNPAAVEPNTYDYV* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5622649 5631076 - Vvi5g546 Vvi5g546 786688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g546 740 PANTHER BNAA04G05880D PROTEIN 91 727 IPR030311 GO:0008272|GO:0009507|GO:0015116
Vvi5g546 740 Pfam Sulfate permease family 158 537 IPR011547 GO:0016021
Vvi5g546 740 SUPERFAMILY SpoIIaa-like 596 712 IPR036513 -
Vvi5g546 740 TIGRFAM sulP: sulfate permease 145 708 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi5g546 740 PANTHER SULFATE TRANSPORTER 91 727 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi5g546 740 Pfam STAS domain 590 708 IPR002645 -
Vvi5g546 740 ProSiteProfiles STAS domain profile. 589 712 IPR002645 -
Vvi5g546 740 CDD STAS_SulP_like_sulfate_transporter 590 705 - -
Vvi5g546 740 Gene3D STAS domain 569 714 IPR036513 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g546 Vvi7g62 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g546 K17471 - vvi:100245945 1268.06