Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g547 ATGGGGAAGACAGGCAAATGGATTAGAAACTTCTTGACAGGGAAGAAAGATAAGGAGAGAGACAGAGAGAAAGACAAGGAAAAGCTTAACTCAATTGCCATTGAGAATCCAAGCACCCCCATTCTTATCCCACCAACAACTCCCAAAGAAAAACGACGATGGAGTTTTCGCAGATCGTCGGCAACATCAGCAGGTCACAAGGACTCAATCTCTGTGGACACAATTGCCACTACACCGCCGGCAGGACAGCCAATATTGGATTCTGAAAATGAGCAGAAAAAGCATGCCATGGCAGTGGCTGCAGCTACTGCAGCAGCTGCTGGTGCAGCTGTGGCAGCTGCACAAGCTGCTGCTGCTGTGATCCGACTAACAGCTGCTGCCACCGGGAGAGCAGGAGCAATTGAGGAGGCTGCTGCTGTTAAGATTCAAGCTGCGTTTCGTGCTCATTTGGCAAGAAAAGCACTGTGTGCATTAAAAGGATTAGTGAAGTTGCAGGCACTGGTAAGGGGTAACCTGGTGAGAAAACAGGCCACTGCTACACTCCGGTGCATGCAGGCACTGGTGACAGTTCAGGCTAGAGCTCGAGTTCAGAGGATCCGGATGACTGAAGAAACAAAGCCGGTTAATCAGAGGCAATTGACTCAAAGAAAATCCACACAGGACAATCGGTTCAGGAACACAAATCATGATAAAGATAGAGGCATGGAGGAGAACATTAAGATAGTGGAGATGGACCAAGGGGAGTCAAAGGGAAATAATCAACAGATCTCACCAGCCCCATCAGCCTTGACTGACATGAGTCCAAGAGCCTGCAGTGGGCATTTTGAGGAATATTGCTTCACCACAACGCAAAGCAGCCCCCAGTGCTACTCAGCTGTGTCTAAACCTGATTGCACAGGACTTCCTTTTGCTTTCCCTCAGACAGATTGTGCAGAATCTTTGTCCTATGATTACCCATTCTTCCCCAATTACATGGCTAACACAGAATCTTCAAAAGCCAAAGTGCGATCACATAGTGCACCAAAGCAACGGCCAGAATCCTTTGAGAGGCAACCAAGCCGGCGGAGAGCATCAATGGAAGGAAGAAACATCCCAAGGGCCATGCGGATGCAAAGGTCATCTTCGCATGTAGGCTCCACTGCTCAAGGATACCAATATCCCTGGTCGATCAAACTTGACAGATCAACAGTTTCCCTTAAAGACAGTGAGTGCGGATCTACCAGTACAGTGCTCACAAATACCAACTACTGCAAATCCCTCTTTGCATATGATCTGCAGGGGGATAGGTATTAA 1293 48.18 MGKTGKWIRNFLTGKKDKERDREKDKEKLNSIAIENPSTPILIPPTTPKEKRRWSFRRSSATSAGHKDSISVDTIATTPPAGQPILDSENEQKKHAMAVAAATAAAAGAAVAAAQAAAAVIRLTAAATGRAGAIEEAAAVKIQAAFRAHLARKALCALKGLVKLQALVRGNLVRKQATATLRCMQALVTVQARARVQRIRMTEETKPVNQRQLTQRKSTQDNRFRNTNHDKDRGMEENIKIVEMDQGESKGNNQQISPAPSALTDMSPRACSGHFEEYCFTTTQSSPQCYSAVSKPDCTGLPFAFPQTDCAESLSYDYPFFPNYMANTESSKAKVRSHSAPKQRPESFERQPSRRRASMEGRNIPRAMRMQRSSSHVGSTAQGYQYPWSIKLDRSTVSLKDSECGSTSTVLTNTNYCKSLFAYDLQGDRY* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5650419 5653062 - Vvi5g547 Vvi5g547 786689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g547 430 MobiDBLite consensus disorder prediction 335 362 - -
Vvi5g547 430 MobiDBLite consensus disorder prediction 247 262 - -
Vvi5g547 430 MobiDBLite consensus disorder prediction 1 79 - -
Vvi5g547 430 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 255 407 - -
Vvi5g547 430 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 248 - -
Vvi5g547 430 MobiDBLite consensus disorder prediction 246 267 - -
Vvi5g547 430 ProSiteProfiles IQ motif profile. 135 163 IPR000048 GO:0005515
Vvi5g547 430 SMART iq_5 134 156 IPR000048 GO:0005515
Vvi5g547 430 SMART iq_5 157 178 IPR000048 GO:0005515
Vvi5g547 430 MobiDBLite consensus disorder prediction 203 232 - -
Vvi5g547 430 ProSiteProfiles IQ motif profile. 159 186 IPR000048 GO:0005515
Vvi5g547 430 Gene3D - 135 186 - -
Vvi5g547 430 MobiDBLite consensus disorder prediction 58 79 - -
Vvi5g547 430 MobiDBLite consensus disorder prediction 10 31 - -
Vvi5g547 430 PANTHER IQ-DOMAIN 5-RELATED 255 407 - -
Vvi5g547 430 PANTHER IQ-DOMAIN 5-RELATED 1 248 - -
Vvi5g547 430 Pfam Protein of unknown function (DUF4005) 277 362 IPR025064 -
Vvi5g547 430 MobiDBLite consensus disorder prediction 206 221 - -
Vvi5g547 430 Pfam IQ calmodulin-binding motif 137 155 IPR000048 GO:0005515
Vvi5g547 430 Pfam IQ calmodulin-binding motif 162 176 IPR000048 GO:0005515
Vvi5g547 430 MobiDBLite consensus disorder prediction 332 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g547 - - - vvi:100244856 766.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g547 Vvi14g474 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g547 Blo01g00116 . . Bda08g00246 Bpe04g00817 Bpe14g01207 Bma04g00767 Bma05g01099 Cmo08g01104 Cmo17g00207 Cma06g01376 Cma14g01742 Car06g01191 Car14g01570 Sed12g0964 Cpe08g00280 Cpe03g01460 Bhi01g00766 Tan10g0796 Cmetu06g2556 Lac12g2258 Hepe05g1582 . Lcy11g1577 Cla06g00605 Cam06g0643 Cec06g0646 Cco06g0649 Clacu06g0630 Cmu06g0624 Cre06g1391 Cone14ag0869 . . . Lsi05g01633 Csa02g01132 Chy05g00390 Cme06g00579 Blo02g00523 . Bda11g00594 . Bpe05g00890 Bpe13g00591 . Bma06g01568 . Cmo06g01388 Cmo14g01779 Cma08g01130 Cma17g00215 Car08g01011 Car17g00192 Cpe12g00183 Cpe17g00159 . . . . . . . Cla05g00513 Cam05g0564 Cec05g0576 Cco05g0574 Clacu05g0561 Cmu05g0532 Cre05g0601 Lsi09g01300 Csa03g01295 Chy06g00550 Cme05g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007513 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36