Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g55 ATGCTCGGTGCTTTGATGAATCTCCTCTCTCTCTGTTTGAAGCCATTTGGCCGTGATTCAGGGAATGTCGAGCTTGGGAGTGAAGGAAGAGAGGGTTTGCTTTGGTTTCGGGATATTGGGCATTATGCGTCCGGCGACTTCTCGATGGCCGTGGTTCAGGCCAATCAGGTGCTGGAGGACCAGAGCCAGATCGAGTCGGGGCCATTTGGGACCTTCGTGGGGGTTTACGACGGTCACGGAGGGCCCGAAGCGGCTCGCTACGTGTGCGATCACCTTTTTCGGAATTTCCAAGCAATATCAGCTGAGTCCGAGGGTGTTGTGACCACGGAGACAATCAGAAGGGCTTTTCTCCAAACAGAGGAAGGGTTTACAGCTCTTGTGTCCCAGTTATGGATTAGTCAACCCAATCTGGCGTCAGTTGGCTCATGCTGTCTAGTGGGAGTTATATACGAGCAGACCCTTTTCATTGCAAACCTGGGAGATTCGCGGGTTGTGTTGGGCAAGAAAGTAGGCAACACTGGTGTTGTTGCTGCCATACAGCTCTCGACTGAACACAATGCTAACGTTGAGGCTGTCAGGCAAGAGCTCAAAGACTTGCACCCCAATGATCCCCAAATTGTTGTCCTCAAGCATGGTGTTTGGAGAGTAAAGGGCATTATTCAGGTTTCTAGATCTATAGGCGACGTATATATGAAACATGCGCAGTTTAACAGAGAACCACTTAATGCGAAATTCAGACTTCCTGAACCAATGAACATGCCTATCTTGACTGCCAATCCATCTATTATTTCTCATACTCTCCACCCAAATGATTCTTTCCTTATATTTGCATCTGATGGTCTATGGGAACACTTGAGTAATGAAAAAGCTGTGGATATCGTCCATAGTCATCCACGTGCAGGAAGTGCCAAACGACTTGTAAAGGCAGCCCTCCAAGAAGCAGCAAGAAAACGAGAAATGCGGTACTCAGATCTGCGAAGGATTGACAAGAAGGTCAGACGACATTTTCATGACGACATAACTGTTATTGTTTTGTTCTTAAACCACGACCTAATATCCAGAGGCATGGTGCAAGACCCTCCACTTTCAGTTCGTAGTGCACTGGAACACTGA 1113 47.8 MLGALMNLLSLCLKPFGRDSGNVELGSEGREGLLWFRDIGHYASGDFSMAVVQANQVLEDQSQIESGPFGTFVGVYDGHGGPEAARYVCDHLFRNFQAISAESEGVVTTETIRRAFLQTEEGFTALVSQLWISQPNLASVGSCCLVGVIYEQTLFIANLGDSRVVLGKKVGNTGVVAAIQLSTEHNANVEAVRQELKDLHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHAQFNREPLNAKFRLPEPMNMPILTANPSIISHTLHPNDSFLIFASDGLWEHLSNEKAVDIVHSHPRAGSAKRLVKAALQEAARKREMRYSDLRRIDKKVRRHFHDDITVIVLFLNHDLISRGMVQDPPLSVRSALEH* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 648108 653215 - Vvi5g55 Vvi5g55 786197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g55 370 ProSitePatterns PPM-type phosphatase domain signature. 72 80 IPR000222 GO:0043169
Vvi5g55 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 370 - -
Vvi5g55 370 Gene3D - 39 357 IPR036457 -
Vvi5g55 370 SMART PP2C_4 38 345 IPR001932 -
Vvi5g55 370 CDD PP2Cc 47 347 IPR001932 -
Vvi5g55 370 Pfam Protein phosphatase 2C 71 317 IPR001932 -
Vvi5g55 370 SUPERFAMILY PP2C-like 55 348 IPR036457 -
Vvi5g55 370 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 370 - -
Vvi5g55 370 ProSiteProfiles PPM-type phosphatase domain profile. 46 347 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g55 K01102 - vvi:100241379 740.725