Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g552 ATGGCTTCACACTTAACTGGGGTCATGTCTTCTTCTACATGTTCCACCACTGCTACAAATGTTTTTGAGATTGGAAAGCACATCACAGTGCTTCTAAGAGCTGAACCAGGCACTTGCACCACCAAGTCATCTCTTCCTGTTCCCCCTCCACTGCAACTCTTGATTGCTACGCCCTCTGAAGCAGGGGAGTTCCCGCTGCTGCTCCTCCTTCATGGTTATCTTCTCTATAACTCTTTCTACTCCCAGCTCATCCAACACATAGCCTCTCATGGTTTCATTGTTCTTGCTCCTCAGTTATACACTGTGGCTGGACCAGATTCAAGCGAAGAGATCAACTCCGCAGCTGCTGTAACAAATTGGTTATCCAAAGGACTCCATGACTTACTTCCTCCCCATGTTCGGCCAAATTTAAGCAAACTAGGACTTGCCGGCCATAGTCGTGGAGGCAAAACTGCTTTTGCTCTAGCACTGAGAAAAGCATCCACTTCTCTGAAATTTTCAGCCTTGATAGGCATAGACCCGGTGGATGGAATGGACAAAGGGAAACAAACCCCTCCACCGGTACTCACCTATGTTCCTCATTCATTTGATCTAGACATGGCAGTAATGGTAATTGGTTCGGGTTTGGGTGAAGTGAAAAGGAACCCTCTGTTCCCTCCTTGTGCCCCCAAGGGCGTAAACCATGAGGACTTCTTTAAAGAATGCCGTGAACCAGCTTGTTATTTTCTTGCCAAGGACTATGGCCATCTTGACATGCTAGACGATGAGACTAATGGAATTAGAGGGAAAGCTACACATTGTTTGTGTAGAAATGGGAAGTCTAGAGAACCCATGAGGAGGTTTGTTGGAGGCATTGTGATTGCATTTATGAAAGCTTATTTGGAAGGCGATAACAGCAGTCTAATCTCCATTAGAGATGGGCATGCTACTGCACCAGTGGAGCTTCAAAATGTTGAGTTTCTCGTGTGA 969 46.13 MASHLTGVMSSSTCSTTATNVFEIGKHITVLLRAEPGTCTTKSSLPVPPPLQLLIATPSEAGEFPLLLLLHGYLLYNSFYSQLIQHIASHGFIVLAPQLYTVAGPDSSEEINSAAAVTNWLSKGLHDLLPPHVRPNLSKLGLAGHSRGGKTAFALALRKASTSLKFSALIGIDPVDGMDKGKQTPPPVLTYVPHSFDLDMAVMVIGSGLGEVKRNPLFPPCAPKGVNHEDFFKECREPACYFLAKDYGHLDMLDDETNGIRGKATHCLCRNGKSREPMRRFVGGIVIAFMKAYLEGDNSSLISIRDGHATAPVELQNVEFLV* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5718041 5720567 + Vvi5g552 Vvi5g552 786694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g552 322 PIRSF CORI1 1 322 IPR017395 GO:0015996|GO:0047746
Vvi5g552 322 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 11 321 - -
Vvi5g552 322 Pfam Chlorophyllase 15 316 IPR017395 GO:0015996|GO:0047746
Vvi5g552 322 Gene3D alpha/beta hydrolase 36 309 IPR029058 -
Vvi5g552 322 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 11 321 - -
Vvi5g552 322 SUPERFAMILY alpha/beta-Hydrolases 50 294 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g552 K08099 E3.1.1.14; chlorophyllase [EC:3.1.1.14] - vvi:100252835 645.195
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g552 Vvi7g54 ECH
Vvi5g552 Vvi7g51 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g552 . . . . . Bpe14g01210 . . . Cmo17g00204 . . . . . . . . . . . . . . Cla06g00609 Cam06g0647 Cec06g0650 Cco06g0653 Clacu06g0634 Cmu06g0628 Cre06g1395 . . . . . Csa02g01128 Chy05g00386 . Blo02g00588 . . . . . . . . . . . Cma17g00211 . Car17g00187 Cpe12g00179 . . . . . . . . . . . . . . . Lsi09g01296 . . Cme05g00484
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010850 0 1 2 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 32