Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g554 ATGAATCCCGGCGTCACCACTCTCCGCTCTATACTGGACAAACCCCTTCACGAACTCACCGAAGAAGACATTTCTCAGCTCACTCGTGAAGATTGTCGCAAATACCTCAAAGAAAAAGGAATGCGTCGTCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTTATTTCGCTTAAATCGTTGCTCGAAACCAGTGAGGGCAGCGGTGCCGGAGTTTTGAGGAAGATCACCGATTCACCGCCGGCGGAAAATCTACCTCCGGTTACCTCCAATTCAGCTGATTCAGGCAAGGAGCTGAGTGCTGATATCCAGATCTCAGTATCAGCTGATGAACTGGTTCCCCTTCCGCCAAAAGATCATCATCCAGAATCCACCCCTTCTGGCGAATTAGCCAGCCGGCCTCCAGAGGCAGACACCAAGCATACTTGTCCCAGAAGTCCAGGTGCAACAAATTGTTTGGTTGGGCAGATGACAATTTTCTACTGTGGAAAGGTGAATGTGTATGATGGAGTTCCAGATGATAAGGCACAAGCAATCATGCATCTTGCAGCAAGCCCATTCCATTTGCCTTCAGATGACCCCTTTAGTGGTGCTGCTATGCTTTGCTCCTCTCCATGCCATTTGCATACTGCCAATGTTAAACATGGCCATATTCCTCCTCGAGCCATGGTTTCTCAGACTATGCAAACAGATGTTGAAGGTCAGGTTGACAGAAAATTATCATTGCAAAGATATTTCGAAAAGCGAAAAGACAGATTTAAGAGCAGGAAAAAAATAGGACTACCTTCTGGTAGCTTGGAGATGTATGTGAACCATCAAGCAAGGACACAACCCTCGAATGGGCAATCAAGCCGGAGTGGCACAAGCTCTCCACCCCAGCATGGATTGTCGCACACCCTGTGCAGCTCAGCTGACAACCATACAAAGAATTTCACTCCTTTTGTTGATCTAAACAGTAAAGATATCCAAGAAAGTTGA 978 47.24 MNPGVTTLRSILDKPLHELTEEDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKSLLETSEGSGAGVLRKITDSPPAENLPPVTSNSADSGKELSADIQISVSADELVPLPPKDHHPESTPSGELASRPPEADTKHTCPRSPGATNCLVGQMTIFYCGKVNVYDGVPDDKAQAIMHLAASPFHLPSDDPFSGAAMLCSSPCHLHTANVKHGHIPPRAMVSQTMQTDVEGQVDRKLSLQRYFEKRKDRFKSRKKIGLPSGSLEMYVNHQARTQPSNGQSSRSGTSSPPQHGLSHTLCSSADNHTKNFTPFVDLNSKDIQES* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5731875 5738598 + Vvi5g554 Vvi5g554 786696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g554 325 MobiDBLite consensus disorder prediction 274 325 - -
Vvi5g554 325 MobiDBLite consensus disorder prediction 113 148 - -
Vvi5g554 325 MobiDBLite consensus disorder prediction 72 98 - -
Vvi5g554 325 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 314 IPR040390 -
Vvi5g554 325 Pfam Jas motif 236 255 IPR018467 -
Vvi5g554 325 SMART tify_2 150 185 IPR010399 -
Vvi5g554 325 Pfam tify domain 156 184 IPR010399 -
Vvi5g554 325 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 3 314 - -
Vvi5g554 325 MobiDBLite consensus disorder prediction 83 98 - -
Vvi5g554 325 ProSiteProfiles Tify domain profile. 150 185 IPR010399 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14857 PF06200 tify 4.40E-16 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g554 - - vvi:100242586 640.958