Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g555 ATGGCGATCGAGCAGGCATGGTTTATGGAAGAGAACGATGAGGATCAGAGGCTGCCTCATCATCGCAACCCCAAACAGTTCGTTTCTTTGGACCACTTGGCAGATCTGGGAGTGTTATACTGGAAATTGAACCCTAAAGATTACGAGAACGATCAGGAATTGAAGGAGATCAGAGAATCCCGAGGCTACAACTACATGGATTTGCTGGATTTATGTCCAGAGAGAGTGGAGAATTACGAAGAGAAGCTGAAGAACTTCTACACGGAGCACATACACGGGGACGAAGAGATACGTTACTGTCTGGAAGGAAGCGGATATTTCGACGTTCGGGACAAGGAGGATCGTTGGATTCGCATCTGGATCAAGGAAGGGGATATGATCGTTCTACCTGCCGGAATTTACCACCGCTTCACCCTCGACACCGGCAACTACGTCAAGTTGATGAGGTTGTTCGTGGGTGAGCCGGTGTGGACGGCGTACAATCGTCCCCAAGAACACCACCCCGCCAGGAAGAACTACATCAACAATGTCACACACAAGGTGGGAGTGCCTCTTGAAGCTCACTAG 567 49.74 MAIEQAWFMEENDEDQRLPHHRNPKQFVSLDHLADLGVLYWKLNPKDYENDQELKEIRESRGYNYMDLLDLCPERVENYEEKLKNFYTEHIHGDEEIRYCLEGSGYFDVRDKEDRWIRIWIKEGDMIVLPAGIYHRFTLDTGNYVKLMRLFVGEPVWTAYNRPQEHHPARKNYINNVTHKVGVPLEAH* 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5739314 5740456 + Vvi5g555 Vvi5g555 786697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g555 188 Pfam ARD/ARD' family 5 159 IPR004313 GO:0010309
Vvi5g555 188 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 4 167 IPR027496 GO:0016491|GO:0019509
Vvi5g555 188 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 4 188 - -
Vvi5g555 188 SUPERFAMILY RmlC-like cupins 5 178 IPR011051 -
Vvi5g555 188 CDD cupin_ARD 30 159 IPR004313 GO:0010309
Vvi5g555 188 PANTHER ACIREDUCTONE DIOXYGENASE 4 188 IPR004313 GO:0010309
Vvi5g555 188 Gene3D Jelly Rolls 2 180 IPR014710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g555 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - vvi:104879260 400.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60