Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g560 ATGCTTCTTTATAAGAACTCCTTTGAGCAAACTTACTATGACATTCTCTCTGTCAAGGAAGATGCAAGCTATGAAGAGATCCGTGGATGCTACCGATCTGCCATCCTCAATTCCCATCCTGATAAATTGCAAAAGACAACAGAGACATCCAATACTGATCCTGAAAAATTTAGAATATTGATATTATGA 189 37.04 MLLYKNSFEQTYYDILSVKEDASYEEIRGCYRSAILNSHPDKLQKTTETSNTDPEKFRILIL* 63
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5772785 5779425 - Vvi5g560 Vvi5g560 786702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g560 62 Gene3D DnaJ domain 2 60 IPR036869 -
Vvi5g560 62 ProSiteProfiles dnaJ domain profile. 11 62 IPR001623 -
Vvi5g560 62 Pfam DnaJ domain 11 50 IPR001623 -
Vvi5g560 62 SUPERFAMILY Chaperone J-domain 9 60 IPR036869 -
Vvi5g560 62 PANTHER DPH3 HOMOLOG-RELATED 1 54 IPR044248 GO:0017183|GO:0046872
Vvi5g560 62 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 54 - -
Vvi5g560 62 CDD DnaJ 11 60 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g560 K17867 DPH4, DNAJC24; diphthamide biosynthesis protein 4 - vvi:100258040 115.546
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g560 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .