Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g564 ATGATTGCAGCTCTCAAATCCGAAGAACATAGCCAGTTACAGCTCGTGGAAAGAGAAGACATTGAAGATGAGGAAGACTTGTTTGAAGCTATCGATAAACTGATTTCTCAGGGAATTAATGCTGGAGATGTGAAGAAGCTTCAAGACGCAGGAATTTATACCTGCAACGGCTTGATGATGCACACAAAGAAAAACTTGACAGGGATCAAAGGATTATCAGAGGCCAAAGTTGATAAGATATGCGAAGCAGCTGAAAAGATAGTGAATTTTGGTTACATTACTGGAAGCGATGCTCTGCTCAGAAGAAAGTCGGTGGTTCGCATCACAACTGGAAGCCAGGCCTTAGATGAACTCTTAGGCGGTGGCATAGAAACTTCGGCAATAACAGAAGCCTTTGGGGAATTCCGGTCCGGGAAAACACAGCTCGCACATACTCTATGCGTTTCCACACAGCTTCCCACTAGCATGCGGGGAGGGAATGGAAAAGTTGCTTACATAGATACTGAAGGAACTTTTCGACCTGATAGGATTGTACCAATTGCTGAGCGGTTTGGCATGGATGCTGGAGCTGTTCTTGACAATATCATTTATGCTCGAGCATACACATATGAGCATCAGTACAACCTGCTTCTTGGTCTAGCAGCAAAAATGTCTGAAGAACCTTTTAGACTCCTGATTGTGGATTCAGTAATTGCTCTCTTTCGGGTGGATTTCACGGGAAGAGGGGAATTAGCAGACCGCCAGCAAAAACTTGCACAGATGCTCTCCCGCTTAACAAAGATAGCCGAGGAATTCAATGTCGCAGTTTATATGACCAACCAAGTTATAGCCGATCCTGGTGGAGGGGTGTTCATATCAGATCCAAAAAAACCAGCAGGTGGACATGTGCTTGCCCATGCAGCCACAATAAGGTTAATGTTTAGGAAAGGCAAAGGGGAGCAGCGGGTCTGCAAGGTGTTTGATGCCCCAAATCTGCCTGAAGCTGAAGCAATATCCTTCCCATTGTTTCAGATAACACCAGGAGGTATTGCAGATGCAAAGGACTGA 1047 45.18 MIAALKSEEHSQLQLVEREDIEDEEDLFEAIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYITGSDALLRRKSVVRITTGSQALDELLGGGIETSAITEAFGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELADRQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGVFISDPKKPAGGHVLAHAATIRLMFRKGKGEQRVCKVFDAPNLPEAEAISFPLFQITPGGIADAKD* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5812555 5816771 - Vvi5g564 Vvi5g564 786706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g564 348 PIRSF Rad51 18 348 IPR016467 -
Vvi5g564 348 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 14 333 - -
Vvi5g564 348 Pfam Rad51 91 345 IPR013632 -
Vvi5g564 348 ProSiteProfiles RecA family profile 2. 281 348 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Vvi5g564 348 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 14 333 - -
Vvi5g564 348 SUPERFAMILY Rad51 N-terminal domain-like 23 90 IPR010995 GO:0000166
Vvi5g564 348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 345 IPR027417 -
Vvi5g564 348 ProSiteProfiles RecA family profile 1. 104 275 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Vvi5g564 348 TIGRFAM recomb_DMC1: meiotic recombinase Dmc1 31 346 IPR011940 GO:0000150|GO:0003677|GO:0005634|GO:0007131
Vvi5g564 348 SMART AAA_5 125 311 IPR003593 -
Vvi5g564 348 CDD Rad51_DMC1_radA 108 343 IPR033925 GO:0003677
Vvi5g564 348 Gene3D - 91 348 IPR027417 -
Vvi5g564 348 Gene3D - 9 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g564 K10872 DMC1; meiotic recombination protein DMC1 - vvi:100254575 667.537
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32