Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g565 ATGCAGCTTCCCGATTCCGGTGAGGTCGTCTCCGTGACCGAACCCGTAAAGGACGACCAGTCAAAGCCGTTGGACGCGGCCTCGACCGGCGAAAACAATGCCGATGATCAGTCGATTCTTGATGTTTCTGGGAGGAATTTGGAGTTTTCAGTGTTGGAAAATTGTGAGAGTACTGTTGAGGGGTTGTATTTATACAAAAATGTATTCAATTTGATTCCACAGCGGTTGGGCGAGTTGGGGAGGTTGAAGATGTTGAAGTTCTTCGCAAATGAGATTAACTTGTTTCCGCCTGAGTTTAGGAATTTGGTGGGATTGGAATGCTTGCAGGTCAAGTTATCATCGCCAGGGTTAAATGGATTGCCTTTGCATAAGCTGAGAGGTTTGAAGGAGCTGGAGCTCTGTAAGGTGCCGCCGCGACCTTCGGCTTTTCCATTGTTGAGCGAGATTGCGGGGCTTAAGTGTTTGACTAAGCTCTCTGTGTGTCACTTCTCCATAAGATACCTTCCCCCAGAAATTGGTTGCCTTAATAATTTGGAGGATTTGGACCTTTCGTTCAACAAGATGAAGAGCCTGCCCACCGAGATTAGTTATTTAAGCGCCTTGATATCACTGAAAGTTGCTAATAATAAATTGGTGGAACTACCATCAGGCTTGTCTTCTCTGCAAAGGTTGGAGAATTTGGACCTATCAAATAATAGGTTGACGTCGTTGGGATCTCTTGAGCTTGTCTCAATGCATAACCTTCAGAACTTAAATCTTCAGTACAATAAGCTTCTCAGTTGTTGTCAAATACCCTCATGGATATGCTGCAATTTGGAAGGAAATGGCAAAGATGCATGCAATGATGAATTCATCAGCTCTTCAGTTGAAATGGATGTATTGGAAACTACCAATCAAGAGATTGATGAAAGCATCTGCTGTAATGGCTCTCCTAATACCTCATCAAGTACTTTAACTGGGCCATCATCGAACAGTCGATGTTTTGTGGCAAGGATGTCTCAGAAGGGGTGGAAGCGAAGATATTATTTGCAACAGAGAGCACGTCAAGAGCGTTTAAACAATAGTAGGAAGTGGAAAAGTGAAGACCATGCTGAGGTGTTGACCATCAAGGCAGCGGAAAAATGTGAACATGGAAAACTAGCTGTTCTTCACCCTGAATCTCTTGCAGAACATGCACCAGACATTGTGGTTCTAGATAATGATGATAAACAGTTACTTTCTGAAGAAGCTGAGAGTGAGAATTTGCTTAACAGTGTTGAGGATGCTGAAAGTGGTCCAAGAAAAGGGTCATGTGCTGTCCTTGATTCCATTGCAATAAATCAGGGGAGTAAAAGTGAATGTAATGATGATGATGCATCATTATCCTCTCTATCAAAAGGAGCCAGTGAGAAAAATGAAGGCTCATCTTCAGAGGTATCTAAAAGTACACCAAAGTCGAAAAGGCATTCTGATAGGGATCTTGATAACCCCAAACCATGCAAGGCTCGGAGACCAGTTAATGAACACTCAAATTTGTCTTGTAAATATAGTAAAATTTCATACTGTAACATTGAGGACCGCCTACCAGATGGCTTTTATGATGCAGGGCGTGATCGGCCCTTCATGCCATTGACGGTTTATGAGCAAAATTTTCATTTTGATTCACGTGAAGTCATTCTTTTGGACAGGGAAAGGGATGAAGAGTTAGATGCAATCACTCTGTCTGCGCAAGCGTTGGTGTCCCAGTTGAAGCAGCTAAATGGTTTAACGAAAGAAAGGAAACAGGTTACTGATGATAACCTGCAGATTGCGTCATTGCTTGCTCTTTTTGTATCAGATCATTTTGGAGGCAGTGATAAGAGTGCTCTTATTGAGAGGACACGAAAATCCGTATCTGGTTCAAACTATCAAAAGCCGTTTGTTTGCTCCTGCTCAACTGGAAACCGTAACAATATTAGTACATCTAACAAACAAAATTTGGACACTGTAGAAGATATTGTTGTCTCTGATCTCTGTGAGAAATCTCTTCGTTCTATCAAAGCAAGACGCAATTCCATCATAGTTCCCATAGGGACTTTGCAGTTTGGTGTATGTAGACATCGTGCAGTGCTCATGAAGTATCTATGTGATCGAATGGAGCCTCCAGTTCCTTGTGAGCTTGTTAGGGGCTACTTGGATTTTTTACCACATGCTTGGAACGTTGTTCATACTAAGAGGGGTGATTCATGGGTTCGCATGATAGTTGATGCTTGTCGTCCACATGATATTAGAGAAGAGACAGACCCAGAATATTTTTGCAGATACATTCCTCTCAGTCGGATTAATGTTCCTCTTTCAACTCAAAGCACTCCTGTTACAGGAGGTTCTTTTCCTTCTCTGTCCGCATGTGATGAAATTGCAAATGCACCCTCTAGTTCACTCATCCAGTGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTATTTTAGAAGTATGTGGTGATTCCGTGGATGAAGTTAGGAATTTTGAGTACTGTTGTCTAGGGGAAGTGAGAATTTTAGGTGCTCTTAAACACTCCTGCATAGTAGAGATTTATGGGCATCAGATATCTTCCAAGTGGATTCCTGCATCAGATGGAAATCTGGAGCACCGTGTATTGCAGTCTGCAATTTTGATGGAGCATGTAAAAGGGGGATCTTTGAAGAGTTATTTAGAGAAGCTATCAGAAGCTGGTGAGAAGCATGTCCCAGTGGAGTTGGCATTGTGTATTGCTAGAGATGTTGCATCTGCATTGGCAGAGCTGCATTCAAAACATATTATTCATCGTGACATAAAAAGTGAAAACATTTTGATTGATTTGGATAAGAAGAGAGCTGATGGAACACCTGTCGTGAAGCTTTGTGATTTTGATAGAGCAGTACCTCTTCGGTCTTTCTTACATTCCTGCTGCATTGCACACATTGGAATACCTCCACCTGATGTTTGTGTTGGAACACCTCGTTGGATGGCACCTGAGGTGCTGCGGGCAATGCATAAACGGGAGATATATGGGCTGGAAGTGGATATTTGGTCATATGGGTGTCTCCTCTTGGAACTATTGACTTTGCAAGTTCCTTATTTTGAGTTATCAGAATCGCAGTTTCATGATCAACTTCAGATGGGAAAACGACCACAACTGCCAGAGGAATTGGAAGCATTGGGTTCACAGGAGCCTGAAATGGCTCAATCTGGCAAAGAGGAGGGACCAGAGACTGAAGTAGAAAAACTAGGATTCCTAGTTGATTTGGTCCGCTGGTGCACTAAGGGAAACCCGACTGACCGTCCAACGGCTGAAAACCTCTACAAAATGTTGCTCACACAAACAAGAACTTTCACCAGTTCAAGAAGTTAG 3354 42.73 MQLPDSGEVVSVTEPVKDDQSKPLDAASTGENNADDQSILDVSGRNLEFSVLENCESTVEGLYLYKNVFNLIPQRLGELGRLKMLKFFANEINLFPPEFRNLVGLECLQVKLSSPGLNGLPLHKLRGLKELELCKVPPRPSAFPLLSEIAGLKCLTKLSVCHFSIRYLPPEIGCLNNLEDLDLSFNKMKSLPTEISYLSALISLKVANNKLVELPSGLSSLQRLENLDLSNNRLTSLGSLELVSMHNLQNLNLQYNKLLSCCQIPSWICCNLEGNGKDACNDEFISSSVEMDVLETTNQEIDESICCNGSPNTSSSTLTGPSSNSRCFVARMSQKGWKRRYYLQQRARQERLNNSRKWKSEDHAEVLTIKAAEKCEHGKLAVLHPESLAEHAPDIVVLDNDDKQLLSEEAESENLLNSVEDAESGPRKGSCAVLDSIAINQGSKSECNDDDASLSSLSKGASEKNEGSSSEVSKSTPKSKRHSDRDLDNPKPCKARRPVNEHSNLSCKYSKISYCNIEDRLPDGFYDAGRDRPFMPLTVYEQNFHFDSREVILLDRERDEELDAITLSAQALVSQLKQLNGLTKERKQVTDDNLQIASLLALFVSDHFGGSDKSALIERTRKSVSGSNYQKPFVCSCSTGNRNNISTSNKQNLDTVEDIVVSDLCEKSLRSIKARRNSIIVPIGTLQFGVCRHRAVLMKYLCDRMEPPVPCELVRGYLDFLPHAWNVVHTKRGDSWVRMIVDACRPHDIREETDPEYFCRYIPLSRINVPLSTQSTPVTGGSFPSLSACDEIANAPSSSLIQCKFGSVEAAAKVRILEVCGDSVDEVRNFEYCCLGEVRILGALKHSCIVEIYGHQISSKWIPASDGNLEHRVLQSAILMEHVKGGSLKSYLEKLSEAGEKHVPVELALCIARDVASALAELHSKHIIHRDIKSENILIDLDKKRADGTPVVKLCDFDRAVPLRSFLHSCCIAHIGIPPPDVCVGTPRWMAPEVLRAMHKREIYGLEVDIWSYGCLLLELLTLQVPYFELSESQFHDQLQMGKRPQLPEELEALGSQEPEMAQSGKEEGPETEVEKLGFLVDLVRWCTKGNPTDRPTAENLYKMLLTQTRTFTSSRS* 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5824108 5839208 + Vvi5g565 Vvi5g565 786707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g565 1117 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 60 1115 - -
Vvi5g565 1117 MobiDBLite consensus disorder prediction 1 37 - -
Vvi5g565 1117 MobiDBLite consensus disorder prediction 475 498 - -
Vvi5g565 1117 Gene3D Transferase(Phosphotransferase) domain 1 795 1116 - -
Vvi5g565 1117 SMART LRR_sd22_2 245 261 - -
Vvi5g565 1117 SMART LRR_sd22_2 175 200 - -
Vvi5g565 1117 SMART LRR_sd22_2 221 242 - -
Vvi5g565 1117 SMART LRR_typ_2 245 271 IPR003591 -
Vvi5g565 1117 SMART LRR_typ_2 221 244 IPR003591 -
Vvi5g565 1117 SMART LRR_typ_2 198 220 IPR003591 -
Vvi5g565 1117 SMART LRR_typ_2 175 197 IPR003591 -
Vvi5g565 1117 SMART LRR_typ_2 79 101 IPR003591 -
Vvi5g565 1117 Pfam Ethylene-responsive protein kinase Le-CTR1 665 730 - -
Vvi5g565 1117 ProSiteProfiles Protein kinase domain profile. 772 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g565 1117 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Vvi5g565 1117 MobiDBLite consensus disorder prediction 442 474 - -
Vvi5g565 1117 SMART LRR_bac_2 221 240 - -
Vvi5g565 1117 SMART LRR_bac_2 175 194 - -
Vvi5g565 1117 SMART LRR_bac_2 198 217 - -
Vvi5g565 1117 PANTHER BNAC08G43810D PROTEIN 60 1115 - -
Vvi5g565 1117 MobiDBLite consensus disorder prediction 442 500 - -
Vvi5g565 1117 SUPERFAMILY L domain-like 57 272 - -
Vvi5g565 1117 Pfam Protein kinase domain 834 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g565 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Vvi5g565 1117 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vvi5g565 1117 SUPERFAMILY Protein kinase-like (PK-like) 829 1106 IPR011009 -
Vvi5g565 1117 Gene3D Ribonuclease Inhibitor 141 288 IPR032675 -
Vvi5g565 1117 SMART serkin_6 786 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g565 1117 PRINTS Leucine-rich repeat signature 178 191 - -
Vvi5g565 1117 PRINTS Leucine-rich repeat signature 221 234 - -
Vvi5g565 1117 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g565 - - - vvi:100249467 2177.13
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76669 PF00069 Pkinase 4.90E-36 CL0016 Vvi PK