Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g566 ATGCCTATGAGGCAGATGAAAGAGAGCTCAGAGCAACACCTAGTGATCAAAACCCACTTGCAGAACTCCATGAACCCAGTTCAAAAGCCCCCCAAAACTGCTCAAAATGGGAAAGGCCCCCCATCCCATGAACCTCAGAACGCCAAACCTCACAGCCAAACTTCGCCTTCATCAAAAAACAGAGGGAGGAGAAGAGGAAGAGGTGGCAGAAAATCTGATCAAAGCGATGTTTTCATGCGCCCCAGTTCAAGGCCCTGCACTGTAGCAGATAAGCCAGTTTTGGCGCACCAGGCTGGACCTCTTATGGGTTTTCCTTCTTCAAGTAAGTCTTTGACCTTTGCACCTAGGCCCGGGTATGGTCAACTTGGAACAAAATGTATTGTGAAGGCCAACCATTTCTTTACTGAGTTACCAGAGAAGGACTTGAATCAGTATGATGTGACAATTACTCCTGAAGTGTCCTCAAGAACGGTTAACAGAGCTATCATGAATGAGCTGGTGAAACTGTACAAAGAATCTGACTTGGGAATGAGATTGCCTGCTTATGATGGTAGAAAGAGTCTATACACTGCTGGTGAGCTTCCGTTTGCTTGGAAGGAGTTCAAGGTTAAGCTAGTTGATGAAGAGGATGGAATCAATGGTCCCAAAAGAGAGAGGGAGTATAAAGTGGTCATCAAGTTTGTAGCACGGGCAAGCTTGCATCATTTGGGCCAGTTTCTGGCTGGTAAGCGAGCAGATGCTCCACAGGAAGCTCTTCAAATTCTTGACATTGTATTGAGAGAGCTCTCTACTAGAAGGTACTGTCCTGTTGGGAGATCCTTCTTTTCTCCTGATATTAGAGCACCTCAACGTCTTGGAGAAGGTTTGGAGTCATGGTGTGGATTCTACCAGAGTATAAGACCTACTCAGATGGGTTTGTCACTGAATATTGATATGTCTTCGGCTGCATTCATTGAAGCTCTCCCTGTAATAGAGTTTGTTGGTCAGCTATTAGGCAAAGATGTGTTATCTAGGCCATTGTCTGATTCTGACCGTGTGAAGATCAAAAAGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAGAACTAGTTTTTCCTGTTGATGATAATTCAACCATGAAGTCAGTTGTGGAATACTTCCAAGAAATGTATGGCTTTACAATTCAACATGCACACCTTCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGCTAACTATTTACCTTTGGAGGCCTGCAAAATTGTAGAGGGGCAGCGGTATACCAAAAGGTTGAATGAGAGGCAAATTACTGCTCTATTAAAAGTTACATGCCAAAGACCCAGGGATCAGGAAAATGATATTCTGCAGACGGTTCAACATAATGCTTATGATCAAGATCCATATGCAAAGGAGTTTGGGATCAAAATCAGTGAAAAATTAGCTTCTGTTGAGGCTCGGATTCTTCCTGCTCCTTGGCTGAAATATCATGAAACTGGGAAGGAAAAGGATTGTTTGCCTCAAGTCGGTCAGTGGAATATGATGAACAAAAAAATGATCAATGGAATGACTGTTAGCCGGTGGGCATGTATCAACTTCTCTCGGAGTGTGCAAGAGAGTGTTGCTCGTGGGTTTTGTAATGAATTGGCTCAAATGTGTCAAGTGTCTGGCATGGAATTTAACCCCGAACCTGTTATTCCAATCTACATGGCCAGACCTGATCAAGTAGAGAAAGCTCTGAAGCATGTGTATCATGCATCTATGAACAAACTCAAAGGAAAAGAATTGGAGCTTCTATTAGCTATTTTACCTGACAACAATGGGTCTTTATATGGTGATCTTAAGAGAATATGTGAAACCGACCTTGGTCTAATATCACAATGCTGTCTCACAAAACATGTCTTCAAGATTAGCAAGCAGTACTTAGCCAATGTGTCTCTGAAGATTAATGTTAAGATGGGTGGTAGAAACACTGTCCTTTTGGATGCTATCAGTTGCAGGATACCATTAGTTAGTGACATACCAACCATAATATTTGGAGCAGATGTGACGCATCCAGAGAATGGAGAAGACTCCAGCCCTTCAATTGCTGCTGTAGTAGCTTCTCAGGACTGGCCTGAAGTCACAAAATATGCAGGATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGGGATCTTTTGGTTTCCTTTCGGAAGGCGACAGGGCAGAAGCCACTAAGGATTATATTTTACAGGGATGGTGTTAGTGAAGGGCAATTTTATCAAGTGCTACTTTATGAACTAGATGCAATCCGGAAAGCTTGTGCTTCTCTAGAACCAAACTATCAACCACCAGTTACTTTTATTGTGGTTCAAAAACGACATCATACCCGATTGTTCGCTAACAACCACAGGGACCGGAACAGCACTGACAGAAGCGGGAATATTTTGCCTGGCACAGTGGTTGATTCTAAAATTTGCCATCCGACTGAATTTGATTTTTATCTCTGCAGCCATGCTGGTATTCAGGGGACAAGTAGGCCTGCTCATTACCATGTTTTATGGGATGAGAACAATTTCACAGCAGATGGAATTCAATCCTTGACGAACAATCTTTGCTACACATATGCAAGGTGCACACGATCGGTGTCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCATTTCGAGCCCGATTCTACATGGAGCCTGACATGCAGGAGAATGGTTCAAATGGAGGTGGCAGTGAAAATGTGAAAAGAGTAATGTTTTATTGTTAG 2862 43.08 MPMRQMKESSEQHLVIKTHLQNSMNPVQKPPKTAQNGKGPPSHEPQNAKPHSQTSPSSKNRGRRRGRGGRKSDQSDVFMRPSSRPCTVADKPVLAHQAGPLMGFPSSSKSLTFAPRPGYGQLGTKCIVKANHFFTELPEKDLNQYDVTITPEVSSRTVNRAIMNELVKLYKESDLGMRLPAYDGRKSLYTAGELPFAWKEFKVKLVDEEDGINGPKREREYKVVIKFVARASLHHLGQFLAGKRADAPQEALQILDIVLRELSTRRYCPVGRSFFSPDIRAPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMSSAAFIEALPVIEFVGQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPLEACKIVEGQRYTKRLNERQITALLKVTCQRPRDQENDILQTVQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCNELAQMCQVSGMEFNPEPVIPIYMARPDQVEKALKHVYHASMNKLKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSNGGGSENVKRVMFYC* 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5849435 5858977 - Vvi5g566 Vvi5g566 786708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g566 953 MobiDBLite consensus disorder prediction 39 57 - -
Vvi5g566 953 ProSiteProfiles Piwi domain profile. 609 930 IPR003165 GO:0003676
Vvi5g566 953 SUPERFAMILY Ribonuclease H-like 597 931 IPR012337 -
Vvi5g566 953 CDD PAZ_argonaute_like 320 434 - -
Vvi5g566 953 Pfam PAZ domain 347 450 IPR003100 GO:0005515
Vvi5g566 953 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 60 947 - -
Vvi5g566 953 Gene3D paz domain 314 439 - -
Vvi5g566 953 Pfam Mid domain of argonaute 518 595 IPR032473 -
Vvi5g566 953 Pfam Piwi domain 610 929 IPR003165 GO:0003676
Vvi5g566 953 Pfam Argonaute linker 2 domain 463 507 IPR032472 -
Vvi5g566 953 SMART DUF1785_2 268 320 IPR014811 -
Vvi5g566 953 Pfam N-terminal domain of argonaute 125 259 IPR032474 -
Vvi5g566 953 SMART PAZ_2_a_3 325 457 IPR003100 GO:0005515
Vvi5g566 953 SUPERFAMILY PAZ domain 315 475 IPR036085 GO:0005515
Vvi5g566 953 Pfam Argonaute linker 1 domain 269 318 IPR014811 -
Vvi5g566 953 Gene3D - 678 953 IPR036397 GO:0003676
Vvi5g566 953 CDD Piwi_ago-like 479 929 IPR045246 -
Vvi5g566 953 PANTHER PROTEIN ARGONAUTE 10 60 947 - -
Vvi5g566 953 MobiDBLite consensus disorder prediction 1 86 - -
Vvi5g566 953 ProSiteProfiles PAZ domain profile. 321 435 IPR003100 GO:0005515
Vvi5g566 953 SMART Piwi_a_2 609 930 IPR003165 GO:0003676
Vvi5g566 953 MobiDBLite consensus disorder prediction 15 32 - -
Vvi5g566 953 Gene3D - 499 672 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g566 K11593 - vvi:100244311 1877.45