Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g567 ATGAGAGGCCCAAACCCAAGCTCTAATCACCCAACTCTTCAACTCTTGGAAAAATGCAAAACCTTGGACACCCTAAAGCAAGTCCATGCTCATATGATCACAACCGGCCTCATTTTTCACACCTACCCTCTCAGTAGAATCCTCCTGATCTCCTCCACCATAGTCTTCACCCATGCACTCTCCATCTTTAACCATATCCCAAACCCAACCATCTTCCTCTACAACACCCTCATTTCCTCACTTGCCAACATCAAGCCCCACACCCACATCGCCTTCTCTCTCTATTCTAGAGTTCTAACTCACACAACCCTTAAACCCAACGGCTTCACCTTCCCTTCTCTCTTCAAGGCTTGTGGATCTCAGCCATGGCTCCGCCATGATATCTTTTTAATCAAATCAGTGTTGACTTTATTCATTGAGATGCAAAAATCTCTTATCAAGGCTAATGAAGTCACTCTGGTAGCTTTGATTAGCGCCTGTGCTGAATTGGGTGCACTCAGTCAAGGTGCATGGGCACATGTCTACGTATTAAAGCACAATCTTAAGCTAAATCACTTTGTAGGGACTGCTTTAATTGATATGTATTCAAAATGCGGGTGTCTGGATTTAGCATGTCAACTGTTTGATCAATTACCCCACAGGGACACGTTATGTTACAATGCGATGATCGGAGGGTTTGCAATTCATGGTTATGGGCATCAAGCACTTGATCTTTTCAAGAAAATGACACTTGAGGGTTTGGCTCCTGACGATGTAACTCTAGTAGTCACAATGTGTAGTTGCTCTCATGTGGGATTGGTGGAGGAAGGATGCGATGTTTTTGAGTCCATGAAAGAGGTTTATGGGGTTGAACCGAAACTAGAGCATTATGGATGCCTTGTGGATCTTCTAGGTCGAGCTGGGCGGCTCAGGGAAGCAGAGGAAAGGGTTCTGAATATGCCCATGAAGCCAAATGCTGTCATATGGAGGTCTTTACTCGGGGCAGCAAGGGTTCATGGGAATCTAGAGATAGGAGAAGTTGTACTCAAACACTTGATACAGTTAGAGCCAGAGACCAGTGGAAACTATGTGCTCTTGTCTAATATGTACGCAAGCATCAACAGATGGGATGATGTGAAGAGAGTGAGGAAACTGATGAAGGATCATGGCATTAACAAAGTGCCTGGAAGCAGCTTGGTAGAGGTTGGCGGTGCCATGCATGAGTTCCTGATGGGGGACAAGACACACCCACGTTCAAAAGAGATTTACTTGAAGCTTGAAGAGATGAGCAGACGGCTACACGAGTATGGCCATAAACCCAGAACCCTAGAAGTGTTGTTTGACATTGAAGAGGAGGAGAAGGAAGATGCCCTCTCTTATCATAGTGAAAGATTAGCAATTGCCTTTGCTCTCATAGCATCTCATCACTGTGCTCCTATTCGAATCATAAAGAACCTTAGGGTATGTGGTGACTGCCATACAAGTAGTAAGCTTATTTCAAAGATATACGAAAGAGAAATTATCGTAAGAGATCGGAATCGGTTTCATCATTTCAAAGAAGGGGCTTGTTCTTGTTCGGATTACTGGTAA 1569 44.3 MRGPNPSSNHPTLQLLEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTIVFTHALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5874227 5876000 + Vvi5g567 Vvi5g567 786709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g567 522 Pfam DYW family of nucleic acid deaminases 430 522 IPR032867 GO:0008270
Vvi5g567 522 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 125 - -
Vvi5g567 522 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 132 496 - -
Vvi5g567 522 Gene3D Tetratricopeptide repeat domain 189 410 IPR011990 GO:0005515
Vvi5g567 522 Pfam E motif 332 394 IPR046848 -
Vvi5g567 522 Gene3D Tetratricopeptide repeat domain 49 175 IPR011990 GO:0005515
Vvi5g567 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi5g567 522 Pfam PPR repeat family 215 261 IPR002885 -
Vvi5g567 522 Pfam E+ motif 400 426 IPR046849 -
Vvi5g567 522 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Vvi5g567 522 PANTHER OS12G0128200 PROTEIN 14 125 - -
Vvi5g567 522 PANTHER OS12G0128200 PROTEIN 132 496 - -
Vvi5g567 522 Pfam PPR repeat 189 211 IPR002885 -
Vvi5g567 522 Pfam PPR repeat 289 308 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g567 - - - vvi:100264947 872.848
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .