Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g570 ATGGGTGAAGTTCTGGCTTCAGTTGCTGAGACGATAAAGAACTTTGCTGTAATGTACCTGGTAGACATCACAGAGTATGAGAGCAATCAAATCTTTGCCTATATAAATATGAAGCATCCAGGATACCTATCCATTCAGAAATTGTCACTTTATTATGTTGCTCGCAGGAAGGAGGAGTTCGGTTCAAACACATACCAGAAGCCCCCTACGAAAAGCTTCCTCCACTTTGTGGAAGGGTGGTATGATGGTGGAAGCATCTTTCTTGCTATCTTTCTAGTCATTTCTGTCTCTGCTGTAATTAACTTCAAACAAAACAGACAATTTGATAAGTTGTCAAAGGCCAGCAACAATATACAGGTTGATGTTGTCCGGCATGGGCGACTTCAGCAGATTTCTATATTTGAGATTGTTGTTGGAGATGTTGTTTGCTTGAAGATTGGAGATCAAGTTCCTGCTGATGGATTGTTCTTGGATGGGCATTCATTACAAGTGGATGAATCAAGCATGACAGGGGAGAATGATCATGTGGAAGTCAACACCAGCCTGAATCCATTTTTGTTTTCTGGAACCAAAGTGGCTGATGGATATGCTCGAATGCTTGTGACGTCTGTTGGGATGAACACAACGTGGGGTGAGATGATGAGCACAATCAGCCACGACGCTAATGAACAGACACCCTTACAAGCTCGGCTTAACAAGCTAACTTCATCAATTGGTAAGTTTGGTCTGGCAGCTGCTTTTCTAGTTCTTGCTGGTGACATAGTGAATGCTGTGGTCGGAATCATTGCTGCCGCAATTACCATTGTGGTTGTTGCCATTCCAGAAGGCTTGCCGTTGGCTGTCACACTCACTCTTGGTTATTCAATGAAAAGAATGATGGCTGACCAGGTTATGGTTCGGAAGCTCTCTGCCTGTGAGACCATGGGCTTCGCCACCATCATTTGTACTGACAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAATTTTGGCTTGGCAAACAACCTATTGAAGCTGCCTCTTCAATTGCCACAGATCTTCTCGAATTGATTCGACAAGGATTCTCTGGTAGTCCCACTGAAAAAGCAATACTTTCTTGGGCTGTCCTGGAACTTGGTATGGACATGGAGAGAATGAAGAAGAATTACACCATTCTTCATGTTGAAGCTTTCAATTCGGAGAAGAAAAGGAGCGGTATTTTAATAAGGAAGAAGGCTGACAACACAATCCACGCGCACTGGAAGGGAGCGGCAGAGATGATACTAGCAATGTGTTCCACTAGCAGCCTCCGCTGCATGGCTTTTGCCCATAAACAAATTCGAAAGGAAGAGCAGGAAATTGGGGAAGGCCTGCAAAAGCTAAAAGAAGACAGCTTGACCCTTATAGCACTGGTCGGAATAAAGGACCCATGTAGACCAGGGGTGAGAAAAGCTGTGGAAGATTGCCAATATGCTGGAGTGAATGTTAAAATGATCACTGGCGACAATATTTTCACTGCGAGAGCCATGGCCACAGAATGTGGAATATTAAGACCAGAGTGCTTGAAAAAGAAAGGCCATGTGGTCGCAGTCACAGGTGATGGCACGAATGATGCACCGGCATTACAAGAAGCTGACATAGGACTTTCCATGGGTATTCAGGGCACAGAAGTGGCAAAGGAGAGCTCAGATATCATCATCTTGGATGATAATTTTGCTTCTGTAGCCACGGTTTTGAGGTGGGGAAGGTGTGTTTATAACAACATTCAGAAATTCATCCAGTTCCAGCTCACATTGAATGTTGCAGCCCTTGTAATCAACTGTGTGGCAGCAGCTTCAACTGCTGAGGTCCCACTGACAGCATTCCACTTACTATGGATGAACTTGGTCATGGACACATTAGTCGTACTCTTGACCCTACATTTCAAAGGACAATCAATCTTTGGCGTGAATAAGGAGAAAGACACCCTGATATTCAACACTTCCGTTCTATGCCAAGTCTTCAATGAATTCAATGCAAGGGAGCTGGAGAAAAAGAACGTGTTTGAGGGGATACATAAGAACAAGTTGTTTTTGGGGATCGTTGGGCTAGCCATTATCCTTCAGGTGGTTATGGTGGAATTTTTGAATAAATTTGCAGATACAGAGAGGTTGGATTGGGGACAATGGGTTGCATGCATTGGAGTTGCAGCTGCATCCTGGCCAATCGGCTGGCTTGTCAAGTGCATACCTGTTTCAGATAAACCAACCTACTTTGTGAAGAAATATTTTGTTTTCATTCACAGAAATGAAATGTGCGATTGGAAATCTGAACAACTTTATCCCTTCTTGTTGGTAGAAAGTCACGGCAGGATGGTAGGGTAG 2349 43.93 MGEVLASVAETIKNFAVMYLVDITEYESNQIFAYINMKHPGYLSIQKLSLYYVARRKEEFGSNTYQKPPTKSFLHFVEGWYDGGSIFLAIFLVISVSAVINFKQNRQFDKLSKASNNIQVDVVRHGRLQQISIFEIVVGDVVCLKIGDQVPADGLFLDGHSLQVDESSMTGENDHVEVNTSLNPFLFSGTKVADGYARMLVTSVGMNTTWGEMMSTISHDANEQTPLQARLNKLTSSIGKFGLAAAFLVLAGDIVNAVVGIIAAAITIVVVAIPEGLPLAVTLTLGYSMKRMMADQVMVRKLSACETMGFATIICTDKTGTLTLNQMKVTKFWLGKQPIEAASSIATDLLELIRQGFSGSPTEKAILSWAVLELGMDMERMKKNYTILHVEAFNSEKKRSGILIRKKADNTIHAHWKGAAEMILAMCSTSSLRCMAFAHKQIRKEEQEIGEGLQKLKEDSLTLIALVGIKDPCRPGVRKAVEDCQYAGVNVKMITGDNIFTARAMATECGILRPECLKKKGHVVAVTGDGTNDAPALQEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRCVYNNIQKFIQFQLTLNVAALVINCVAAASTAEVPLTAFHLLWMNLVMDTLVVLLTLHFKGQSIFGVNKEKDTLIFNTSVLCQVFNEFNARELEKKNVFEGIHKNKLFLGIVGLAIILQVVMVEFLNKFADTERLDWGQWVACIGVAAASWPIGWLVKCIPVSDKPTYFVKKYFVFIHRNEMCDWKSEQLYPFLLVESHGRMVG* 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5920945 5929612 + Vvi5g570 Vvi5g570 786712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g570 782 SUPERFAMILY Calcium ATPase, transduction domain A 117 216 IPR008250 -
Vvi5g570 782 PRINTS H+-transporting ATPase (proton pump) signature 559 584 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi5g570 782 PRINTS H+-transporting ATPase (proton pump) signature 527 543 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 251 429 - -
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 515 632 - -
Vvi5g570 782 PRINTS P-type cation-transporting ATPase superfamily signature 165 179 - -
Vvi5g570 782 PRINTS P-type cation-transporting ATPase superfamily signature 527 546 - -
Vvi5g570 782 PRINTS P-type cation-transporting ATPase superfamily signature 315 329 - -
Vvi5g570 782 PRINTS P-type cation-transporting ATPase superfamily signature 551 563 - -
Vvi5g570 782 SUPERFAMILY HAD-like 313 630 IPR036412 -
Vvi5g570 782 Gene3D - 636 739 - -
Vvi5g570 782 Pfam haloacid dehalogenase-like hydrolase 313 541 - -
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 53 77 - -
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 430 515 - -
Vvi5g570 782 Gene3D - 573 630 - -
Vvi5g570 782 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 86 343 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi5g570 782 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 380 607 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi5g570 782 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 740 IPR023298 -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 53 77 - -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 430 515 - -
Vvi5g570 782 Gene3D - 430 472 IPR023299 GO:0000166
Vvi5g570 782 Pfam Cation transporting ATPase, C-terminus 629 737 IPR006068 -
Vvi5g570 782 Gene3D - 194 343 - -
Vvi5g570 782 Gene3D - 42 193 - -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 78 250 - -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 251 429 - -
Vvi5g570 782 ProSitePatterns E1-E2 ATPases phosphorylation site. 317 323 IPR018303 -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 515 632 - -
Vvi5g570 782 Pfam E1-E2 ATPase 118 293 - -
Vvi5g570 782 PANTHER CALCIUM-TRANSPORTING ATPASE 630 727 - -
Vvi5g570 782 Gene3D - 344 429 IPR023299 GO:0000166
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 630 727 - -
Vvi5g570 782 PANTHER CATION TRANSPORTING ATPASE 78 250 - -
Vvi5g570 782 Gene3D - 473 514 IPR023214 -
Vvi5g570 782 Gene3D - 517 572 IPR023214 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g570 Vvi14g496 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g570 K01537 - vvi:100246058 1222.61