Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g571 ATGTCGTATCTGCTACCGCACCTTCACTCTGGATGGGCCGTCGATCAGGCCATTCTGGCCGAAGAAGAACGCCTCGTTGTTATTCGGTTCGGCCACGATTGGGACGAAACTTGCATGCAGATGGATGAAGTTCTGGCTTCAGTTGCTGAGACGATAAAGAACTTTGCTGTAATATACCTGGTAGACATCACAGAGGTGCCTGATTTCAACACAATGTACGAGCTTTATGACCCATCCACAGTCATGTTCTTCTTCAGGAACAAGCACATTATGATTGATCTTGGCACTGGAAACAACAACAAGATCAACTGGGCCCTCAAGGACAAGCAAGAGTTCATTGACATTGTTGAGACAGTTTACCGTGGGGCGAGGAAGGGTCGTGGTCTGGTTATTGCACCCAAAGACTACTCCACCAAGTACCGATACTAA 429 47.55 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY* 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5938848 5945621 + Vvi5g571 Vvi5g571 786713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g571 142 PIRSF Dim1 1 142 IPR004123 GO:0000398|GO:0046540
Vvi5g571 142 PANTHER THIOREDOXIN-LIKE PROTEN 4A, 4B 1 142 IPR004123 GO:0000398|GO:0046540
Vvi5g571 142 PANTHER - 1 142 - -
Vvi5g571 142 Gene3D Glutaredoxin 1 141 - -
Vvi5g571 142 SMART DIM1_2 4 136 IPR004123 GO:0000398|GO:0046540
Vvi5g571 142 CDD DIM1 10 123 IPR004123 GO:0000398|GO:0046540
Vvi5g571 142 Pfam Mitosis protein DIM1 4 136 IPR004123 GO:0000398|GO:0046540
Vvi5g571 142 SUPERFAMILY Thioredoxin-like 4 137 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g571 K12859 TXNL4A, DIB1; U5 snRNP protein, DIM1 family - tcc:18608490 294.278
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002570 1 7 1 2 2 1 3 2 1 1 2 1 3 2 2 3 1 3 2 2 2 1 2 1 1 1 3 2 1 1 57