Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g574 ATGTCTTCCCCACAAGCATCTGACATGTTTATCAATTGGCCGCCCCAAAAACAGGGACAGATCCTGCCTAACATGAGCCTACCCGTTTCAGACAAAATCAAATTGGACATCGTTGTCGGCCTATCAGATCATAACTGGAGGAATTGCCTATTCTCCTTGAGTTACATAACAGCAGGGACATCATTGACCAGAAAGACAGCCACAAGGAAGATTCCACACTGTAACCCTTCTTTCAGCCCGTATTCATTAATGGCAAGAGAAAGTACAGCACAAGCTACAAGTATGAGGATGTATACTGCTGTTTCTTTCCTGTACAGTACTGTCAGTGAGGGGCCTCCCTTGATGCCAATGTCATTTGCTGAATCTGCAGTAAATATTTCAGAAAAAACAGGCAATTGTCCAACTCAGAAATCTGGGTTGATGTTGTCTGAAATTGAGTCCATACTCGATGTGCCAGCCACCCTTGGCAGACACAACAAGAGATGGCACTTGGCCTTTGCTACAATCTATTGTTCCAGGGCCCTACATTCTCTTCTCAACAAGAAGAAGAGCAGCAAACCCCCGGTTTCTACTCATTCCTTTGTTGTCCTCAGTGTTGAGCCCCACCTTGCCTTCCCAAACATTGATCACACAAGTCTCACTGCAGTAGTGAAAGAGAAAAACTTAGATCAACTTCGCAAATTGGGAGGAGTTGAAGGTGTGGCTGATGCTCTAAAAACAGATACCAAAAGCCGCCTACTAAAAGTTTCTTCTACTTTCACGGGCCGAAGGAAGGGTGGTATGATGTTCGAAAAGTTGTCTAAAGTCAGCAACAACATCGAGGTTGAAACACCCCTACAAGCCCGTCTTAACAAGCTAACTTCATCGATAGGTAAGTTCAATGGCAGCAAGACAAAGGCTGATGATATAGTGAATGCCATGGTCAGAATCATTGCTGCAGCAGTTACCATTAGAATGATGGCTGACCAGGCTATGGTTCGAAAGCTCTCCGCCTGTGAGACCATGGGCTCTGCAACTACAATTTGTACTGATAAAACAGGTACCCTCACTCTGAACCAGATGAAGGTGACAAAGTATTGGCTTGGAAAAGAACCTTTCTCTGAAGCCTTCAATTCAGAGAAGAAAAGAAGCGGAATTTTGATGAGGAAGAAGGCTGACAACAAAATACATGTGCACTGGAAGGGAGCAGCAGAGATGATATTAGCAATGTGTTCAAGTTACTATGATGCTTCTGGAAGCATGAAAGAACTGGATGATGGTGAAAGGATGACATTTGAGCAAATAATTCAAGGTATGGCCGCCAGCAGCCTCCAAGACAGCTTGACCCTCATTGGCCTTGTGGGGATAAAGGACCCATGTAGACCAGGGGTGAGAAAAGCTGTGGAGGATTGCCAATACGCTGGAGTGAATTACACCTCAGAGGAGAGGATGGAGAAAGTTGATAAAATCTGTGTGATGGCTAGATCCTCTCCCTTTGATAAACTTCTCATGGTTCAGTGCCTGAAACAGAAAGGCCATGTGGTTGCAGTGACAGGTGATGGCACAAATGATGCACCAGCATTAAAAGAAGCTGACATAGGCCTTTCCATGGGGATTCAGGGCACGGAAGTTGCAAAGGAGAGTTCAGATATCATCATCTTGGATGATAATTTTGCTTCAGTGGCAACAGTTTTGAGATGGGGAAGATCTGGTGAGGTCCCATTAACAGCAGTGCAGTTATTGTGGGTTAACTTGATCATGGACACATTAGGTGCCCTGGCCCTTGCCACAGAGCAACCCACCAAGGAGCTAATGGAGAAACCACCCGTGGCTGTTAACTCTTACAATCACAACCAAACAGCTATTAAACCACACATAGATTACAAGAAGGTGTCTTTACTGTCCTGGTTATTGGTGATGGGTACTAGTGTTGTGTGCAAGCAAACAGAAGCTTTTGATGCACATGTAATCACAAATCACAAACCATTATAA 1971 44.6 MSSPQASDMFINWPPQKQGQILPNMSLPVSDKIKLDIVVGLSDHNWRNCLFSLSYITAGTSLTRKTATRKIPHCNPSFSPYSLMARESTAQATSMRMYTAVSFLYSTVSEGPPLMPMSFAESAVNISEKTGNCPTQKSGLMLSEIESILDVPATLGRHNKRWHLAFATIYCSRALHSLLNKKKSSKPPVSTHSFVVLSVEPHLAFPNIDHTSLTAVVKEKNLDQLRKLGGVEGVADALKTDTKSRLLKVSSTFTGRRKGGMMFEKLSKVSNNIEVETPLQARLNKLTSSIGKFNGSKTKADDIVNAMVRIIAAAVTIRMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKYWLGKEPFSEAFNSEKKRSGILMRKKADNKIHVHWKGAAEMILAMCSSYYDASGSMKELDDGERMTFEQIIQGMAASSLQDSLTLIGLVGIKDPCRPGVRKAVEDCQYAGVNYTSEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIIILDDNFASVATVLRWGRSGEVPLTAVQLLWVNLIMDTLGALALATEQPTKELMEKPPVAVNSYNHNQTAIKPHIDYKKVSLLSWLLVMGTSVVCKQTEAFDAHVITNHKPL* 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6025513 6051172 - Vvi5g574 Vvi5g574 786716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g574 656 Gene3D - 339 351 IPR023214 -
Vvi5g574 656 Gene3D - 472 556 IPR023214 -
Vvi5g574 656 Pfam haloacid dehalogenase-like hydrolase 339 525 - -
Vvi5g574 656 SUPERFAMILY Calcium ATPase, transmembrane domain M 270 612 IPR023298 -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 470 562 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 563 604 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 142 246 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 439 470 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 368 437 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 292 367 - -
Vvi5g574 656 PANTHER CALCIUM-TRANSPORTING ATPASE 264 293 - -
Vvi5g574 656 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Vvi5g574 656 PRINTS P-type cation-transporting ATPase superfamily signature 445 456 - -
Vvi5g574 656 PRINTS P-type cation-transporting ATPase superfamily signature 511 530 - -
Vvi5g574 656 PRINTS P-type cation-transporting ATPase superfamily signature 535 547 - -
Vvi5g574 656 Gene3D - 564 639 - -
Vvi5g574 656 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 312 563 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi5g574 656 ProSitePatterns E1-E2 ATPases phosphorylation site. 344 350 IPR018303 -
Vvi5g574 656 Gene3D - 352 363 IPR023299 GO:0000166
Vvi5g574 656 Gene3D - 368 452 IPR023299 GO:0000166
Vvi5g574 656 Pfam Cation transporting ATPase, C-terminus 566 603 IPR006068 -
Vvi5g574 656 Gene3D - 306 338 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 439 470 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 264 293 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 563 604 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 470 562 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 142 246 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 292 367 - -
Vvi5g574 656 PANTHER CATION TRANSPORTING ATPASE 368 437 - -
Vvi5g574 656 SUPERFAMILY HAD-like 340 586 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g574 K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] - qsu:111998863 470.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g574 Vvi14g494 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g574 . . Bda03g00859 . Bpe04g00812 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021177 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4