Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g578 ATGGGAAATGAGATGGGCAACAGCAACGTATCAGGGCTGCAAGAAGAAAAAAGGACGGCGGAAACTGCCGAAAATTCTTTGCAAGAAGCTGGTTTTGCAGACAATGTAAAAGAAGAAAATCATATAGTTCCTGCAGTTGAAGACAAAGATTTTCATGAAAAAGTTCCAGGGTTGGCATCTGATGAAGGAAATCAAATAGTTCCTGCTGTTGAAGACACAAATTTTCATGAAAAAATTACAGGGTTGGCATCTGGTGAAGGAAATCAAATAGTTCCTGCTGTTGAAGACACAAATTTTCATGAAAAAATTACAGGGTTGGCATCTGGTGAAGGAAATCAAATAGTTCCTGCTGTTGAAGACACAAATTTTCATGAAAAAATTACAGGGTTGGCATCTGGTGAAGGAAATCAAATAGTTCCTGCTGTTGAAGACACAAATTTTCATGAAAAAGTTGCAGCGTTGACATCTGGTGAAAGAAATCAAATAGTTCCTGCAGTTGAAGACACAAATTTTCATGAAAAGGTTACAGGGTTGGCATCTGGTGAAGGAAATCAAATAGTTCATGCAGTTGAAGACACAAATTTTCATGAAAAAATTACAGGGTTGGCATCTGGTGAAGGAAATCAAATTCCTGCAGTTGAAGACATGAATTTTCATGAAAAAGTTACAGGGTTGTCATCTGATGAAGGAAATCAAACAGGTCCTGCAATTGAAGATAAAGATGTTCATGAAAAAGTTACATGGTTGGTATCTGATGATCAACATGAAGCTGGAGATCCTTGCATTGATCATCAGACATCAGATGGAATAGAGCAAGATGACTCTAAGATTCAGCCTCCTCCTGGATCTCCACAAGTTGTCATACAATCAAAACATGCGAATACAGATAGCAGAATCCAGCCAGCTTCTCTGTCTGCAGATGACGAGAATGATGAAACACAGATTGAGTCAAATGTGGAAGATAAACTGTTGGAAACAAGTGAGAAGCAAATTGAAGGGCAGACTTCAAGTGAAAAAGAGAGAGAAGAGACAAGAAGTTCAAGTTGTACCAATTCTGCACCAAACAGTCCAGAACATCTAGGATATGTAGAACCAGATTTTGATCAACATGAATTGGATAAAATTCATGCTGACCCATCCATTGAGAACCACAGCGAGACAATGCAAGGGAGCAAGGAAATTCTAGGAGTGAGTTTATCCTGTGACAGTGGGGAGAAGGGTCAGTCAGATGCTGAAATAGCACACACTCTAGCTGAAAGTGTTGGATCTGATACCAATCCAGCAATAGGAAAGAGAAGGGAAGAAATGGCCTCTACAGAAGAGCAAGTGTCTGATACAAGCATACTTGAAGAGAAGGCTGAAATTCGAGATGGAGATGAGGTCCCCAATGGCTTGAGCAAAACCTCAAGTGGTTCAGGGAACAACAGTGATGAGGGGTTACCCATGGAGATGAATTTAATTAGGAATGGTTCCTTGGATATACAGCAAGAAGCCATGGGGAACAAAGGTGATGGAGGGTTACCTGTGGAGATGAATTTAATTCAGAACGGTTCCTCGGATTTACAGTCAGAGGCCATCCCACTGACTGATTCACTGGACTCTTTTCAGGAAGTTGCAAAGCCTGAAGATAAGTGTGTGGTTCTTACTGAGGACACAAAATTGATTGGGCTTGGATTAGAAAATAAAGACGACATGCCTGATCTTTGCCCAACTCAGTTTTGTGAGGAGTTGCTGAATGAATCTAAAACTAACAAGTCAGACTCTTCTCATTCTGATCAGGAGAACGATGGAAAGGAGGGCGTTATGGATACTTCTTGCAATTCTGCAGTGGACAAGGACTTCCAAGTTGAGGAGGCAAAGCTGCTCGAGAATGCTTACAAAGTTCATTTATGTGATAGCAGCCCAAATTCAACCTTGGAGGAACTCTGCAAGAATCCAGAAGAAGGAACTGCCAAGCTCTCTAAAATAGATACTGTTTCAACAGAATTCTTTGTCACTGACTTCAACCATGAAGGAGAGGAGCCAACAGAGAAGAACATGGTGGAAGAAATACTGGAGAAAGCAGAATATTCATATGCAGTGGGAAATGATATAGAAGAAAGAAAAACAACAGAAGTGAGTGATTTCCAATCACATCCAATTGACGAAGCAGGAAGTTTGCTTCCACCACCTCCAGCAGCATTCCCTCTGCAGTCTCAAGAGCACGAACCAGCCACAGTCATGGGGTATGAGAGTTTAGAGAGCAGTGACCATTCTTCATTGGAGCTCCAACAACATGGTAGTGGTGAGTTCTCCCTTATCAAAGCTTCCAATTTGGATGCCTCAGACTTGACTACGGAAACTTTAGTCTTTGCAGTTGAATTGACAAATAAGAAACCTGGCCAAGAGCTTCCACAGAGTCCCAAAACAACTTCAATGGCAGTTGCACAATTCGAAACAGCAGGCCAGTCCAATGTACAATTTGGGAAAGATGAAACACCCGCATTCCCAAGTGGTGGTTATGAAGCACAAGAAGGTGTGGGGAGGGTCAGCACTGAATCAAGCCCTGAAAGCTCGGCCATTCAAGCTGGGATACGAAAATCTCCAAGTTTCCATTTTGAGCTCCTAGCTGAAGGTAGCACTGAAGAATCTGATCAAACTCCTCTACTGTATCACGATAAGACTGTAACTGGAACCTTATCAAGGGGGGTTGATGTTAATTTTAGAAATCCAGTTGGAGAATATGGTCCAGACTCGGTACAGTATCAGGCCATGCCAGTGGAAGAGGATTCATTAAAGTTGGAGAAAAGTGACTCTGAGAAGTCAAGGACTCCATTTCTAAGCTTCTTGAAAGAAGAGGAAGAAGCCTGTTTGGTTGTTTCACAGCAAAACCAAGCTACTGTTGTTGCTGAAAAGAAGGCAGCCGAGGAAGTCTGGAATTCAACATCTCCCAAAAGAAGAACGAAGCGCAGGTCCAGGTCTTCCCTCTTCAGCAACTGCATATGTTGTGCTACTGCAATTAGTTAA 3006 41.92 MGNEMGNSNVSGLQEEKRTAETAENSLQEAGFADNVKEENHIVPAVEDKDFHEKVPGLASDEGNQIVPAVEDTNFHEKITGLASGEGNQIVPAVEDTNFHEKITGLASGEGNQIVPAVEDTNFHEKITGLASGEGNQIVPAVEDTNFHEKVAALTSGERNQIVPAVEDTNFHEKVTGLASGEGNQIVHAVEDTNFHEKITGLASGEGNQIPAVEDMNFHEKVTGLSSDEGNQTGPAIEDKDVHEKVTWLVSDDQHEAGDPCIDHQTSDGIEQDDSKIQPPPGSPQVVIQSKHANTDSRIQPASLSADDENDETQIESNVEDKLLETSEKQIEGQTSSEKEREETRSSSCTNSAPNSPEHLGYVEPDFDQHELDKIHADPSIENHSETMQGSKEILGVSLSCDSGEKGQSDAEIAHTLAESVGSDTNPAIGKRREEMASTEEQVSDTSILEEKAEIRDGDEVPNGLSKTSSGSGNNSDEGLPMEMNLIRNGSLDIQQEAMGNKGDGGLPVEMNLIQNGSSDLQSEAIPLTDSLDSFQEVAKPEDKCVVLTEDTKLIGLGLENKDDMPDLCPTQFCEELLNESKTNKSDSSHSDQENDGKEGVMDTSCNSAVDKDFQVEEAKLLENAYKVHLCDSSPNSTLEELCKNPEEGTAKLSKIDTVSTEFFVTDFNHEGEEPTEKNMVEEILEKAEYSYAVGNDIEERKTTEVSDFQSHPIDEAGSLLPPPPAAFPLQSQEHEPATVMGYESLESSDHSSLELQQHGSGEFSLIKASNLDASDLTTETLVFAVELTNKKPGQELPQSPKTTSMAVAQFETAGQSNVQFGKDETPAFPSGGYEAQEGVGRVSTESSPESSAIQAGIRKSPSFHFELLAEGSTEESDQTPLLYHDKTVTGTLSRGVDVNFRNPVGEYGPDSVQYQAMPVEEDSLKLEKSDSEKSRTPFLSFLKEEEEACLVVSQQNQATVVAEKKAAEEVWNSTSPKRRTKRRSRSSLFSNCICCATAIS* 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6206913 6210538 + Vvi5g578 Vvi5g578 786720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g578 1001 MobiDBLite consensus disorder prediction 316 346 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 34 49 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 252 368 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 580 599 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 417 479 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 1 16 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 278 308 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 428 461 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 252 271 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 580 605 - -
Vvi5g578 1001 Coils Coil 10 30 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 1 49 - -
Vvi5g578 1001 MobiDBLite consensus disorder prediction 463 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g578 - - - vvi:104879263 1919.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g578 . . . . . . . . . . Cma06g01356 . Car06g01177 . Sed02g1355 . . Bhi01g00747 Tan10g0777 Cmetu06g1274 . Hepe05g1595 . Lcy11g1592 . . . . . . . . . . . Lsi05g01648 . . Cme06g00565 . . . . . . . . . Cmo06g01371 . . . . . . . . . . . . . . . . . . . . . . Csa03g01281 Chy06g00533 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008657 0 1 0 0 0 1 2 1 1 1 1 1 4 1 1 3 1 0 1 1 1 1 1 1 1 1 1 3 1 1 33