Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g580 ATGCGGGATGAGGCACTCGAGCCCGCTGATCTTTATGATAGGAAAATGACAGTGGTTGATGTCGGAGGCGGGACTGGGTTCACTACTCTAGGCATAGTTAAGCATGTGGATGCAAAAAATGTCACTATTCTGGACCAATCCCCTCACCAGCTTGCCAAGGCTAAGGAGAAGGAGCCTTTGAAGGAATGCAGGATAATTGAAGGTGATGCAGAGGATCTCCCATTTCCAACTGATTATGCAGATAGATATATCTCTGCTGGAAGTATTGAGTACTGGCCAGATCCACAGCGTGGCATTAGGGAGGCTTACAGAGTACTGAAAATCGGTGGAAAAGCCTGTATAATTGGCCCTGTGTACCCTACCTTTTGGTTGTCTCGTTTCTTTGCAGATTTGTGGATGCTCTTCCCAAAGGAGGAAGAGTACATTGAATGGTTTCGAAAGGCTGGTTTCAAAAATGTTCAAATAAAAAGAATTGGTCCGAAATGGTACCGTGGTGTGCGGCGGCATGGCTTGATTATGGGATGCTCTGTGACAGGTGAAAAGCCTTTTACAGGGGATTCTCCCCTACAGCTTGGCCCAAAAGTGGAAGATGTAAAGAAGCCGGTGAATAAATTTGTGTTTCTTTCGCGGCTCATTCTTGGTGCAATTGCAGGAGCCTACTTTGTGCTGATTCCAATTTACATGTGGCTCAAAGATAAAATTGTTCCAAAAGGTTGGCCTATCTAA 726 45.32 MRDEALEPADLYDRKMTVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKEKEPLKECRIIEGDAEDLPFPTDYADRYISAGSIEYWPDPQRGIREAYRVLKIGGKACIIGPVYPTFWLSRFFADLWMLFPKEEEYIEWFRKAGFKNVQIKRIGPKWYRGVRRHGLIMGCSVTGEKPFTGDSPLQLGPKVEDVKKPVNKFVFLSRLILGAIAGAYFVLIPIYMWLKDKIVPKGWPI* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6217428 6221815 - Vvi5g580 Vvi5g580 786722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g580 241 Gene3D Vaccinia Virus protein VP39 12 166 IPR029063 -
Vvi5g580 241 ProSiteProfiles MPBQ/MBSQ family SAM-binding methyltransferase profile. 1 178 IPR031164 GO:0032259
Vvi5g580 241 Pfam Methyltransferase domain 19 113 IPR013216 GO:0008168
Vvi5g580 241 CDD AdoMet_MTases 17 115 - -
Vvi5g580 241 PANTHER 2-METHYL-6-PHYTYLBENZOQUINONE METHYLTRANSFERASE 1 241 - -
Vvi5g580 241 PANTHER 2-METHYL-6-PHYTYL-1,4-HYDROQUINONE METHYLTRANSFERASE, CHLOROPLASTIC 1 241 IPR044649 GO:0051741
Vvi5g580 241 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 162 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g580 K12502 VTE3, APG1; MPBQ/MSBQ methyltransferase [EC:2.1.1.295] - vvi:100266496 490.345
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007251 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 4 1 1 36