Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g584 ATGATGGACACTGAGGGGAGTGAGATTCACATGGGGGAACTTGGTGGTGCTCCGTCAGCCAAAGCTGAGGATGGTGAGATATGGACTTTTAGCGTCCGAGCTTTTGATTCACCTCGCCCAGAACGCACCATCAACGTCAACTATGATGGTTTCGCCGAAGATGTGAAAGTTGGTGATGAACTCCTTGTGGATGGTGGAATGGTGAGGTTTGATGTGATTGAGAAGATTGGTCCAGATGTCAAGTGTCGATGTACTGATCCTGGACTGCTGCTACCAAGGGCTAATTTAACTTTCTGGCGGGATGGGAGTTTGGTGCGAGAACGTAATGCCATGCTCCCCACAATTTCTTCTAAGGATTGGCTGGACATAGATTTTGGGATTGCAGAGGGTGTTGATTTTATTGCAATATCATTTGTCAAGTCTGCTGAAGTGATTAAGCATCTCAAAAGCTATATTGCTGCAAGATCTCGTGATAGTGACATTGCTGTTATTGCAAAAATAGAGAGCATTGACTCATTAAAGAACTTGGAAGAGATCATTCAAGCGTCAGATGGAGCTATGGTAGCAAGAGGAGATCTGGGTGCTCAGATCCCATTGGAGCAGGTCCCATCTGCTCAGCAAAGGATTGTTCAGCAGTGCAGGCATCTAAATAAACCTGTCATTGTTGCCTCACAGCTACTTGAATCCATGATTGAATATCCTACACCAACCAGAGCTGAAGTAGCTGATGTTTCTGAGGCAGTTAGGCAGCGGGCAGATGCTCTAATGCTCTCTGGTGAGTCAGCCATGGGCTTGTTCCCAGAAAAGGCATTGGCCGTCCTGAGGAGTGTCAGTGTGAGAATTGAGAAGTGGTGGAGAGAAGAGAAACGTCATGAAGCTATGGAACTTCCAGATACAGCATCTTCATTCTCAGATAGTATATCAGAACAGATTTGCAATTCAGCTGCCAAGATGGCGAACAATTTAGCGGTGGACGCGCTTTTTGTTTACACAAAGACCGGGCATATGGCATCTCTCCTGTCACGTTGCCGACCTGACTGCCCAATCTTTGCATTTACAAGCACGATATCTGTGCGGAGGCGTCTCAATCTGCAGTGGGGCCTTATACCCTTCCGCCTTAGTTTCTCTGATGATATGGAAAGCAACCTCAACAGAACTTTCTCCTTGCTTAAGGCCCGGGGGATGATCAAATCAGGTGACCTTGTCATTGCTGTGTCTGACATGTTGCAGTCCATTCAAGTCATGAATGTTCCCTAA 1257 46.54 MMDTEGSEIHMGELGGAPSAKAEDGEIWTFSVRAFDSPRPERTINVNYDGFAEDVKVGDELLVDGGMVRFDVIEKIGPDVKCRCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGIAEGVDFIAISFVKSAEVIKHLKSYIAARSRDSDIAVIAKIESIDSLKNLEEIIQASDGAMVARGDLGAQIPLEQVPSAQQRIVQQCRHLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLFPEKALAVLRSVSVRIEKWWREEKRHEAMELPDTASSFSDSISEQICNSAAKMANNLAVDALFVYTKTGHMASLLSRCRPDCPIFAFTSTISVRRRLNLQWGLIPFRLSFSDDMESNLNRTFSLLKARGMIKSGDLVIAVSDMLQSIQVMNVP* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6284074 6299193 + Vvi5g584 Vvi5g584 786726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g584 418 Pfam Pyruvate kinase, alpha/beta domain 309 408 IPR015795 -
Vvi5g584 418 Gene3D - 7 113 IPR015806 GO:0004743|GO:0006096
Vvi5g584 418 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g584 418 SUPERFAMILY PK C-terminal domain-like 270 416 IPR036918 -
Vvi5g584 418 Pfam Pyruvate kinase, barrel domain 1 286 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 1 287 IPR015813 GO:0003824
Vvi5g584 418 Gene3D - 282 408 IPR036918 -
Vvi5g584 418 PANTHER PYRUVATE KINASE 1 418 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 SUPERFAMILY PK beta-barrel domain-like 8 99 IPR011037 -
Vvi5g584 418 TIGRFAM pyruv_kin: pyruvate kinase 1 407 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PANTHER PLASTIDIAL PYRUVATE KINASE 1, CHLOROPLASTIC 1 418 - -
Vvi5g584 418 ProSitePatterns Pyruvate kinase active site signature. 161 173 IPR018209 GO:0004743|GO:0006096
Vvi5g584 418 Gene3D - 1 281 IPR040442 -
Vvi5g584 418 PRINTS Pyruvate kinase family signature 131 145 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PRINTS Pyruvate kinase family signature 163 189 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PRINTS Pyruvate kinase family signature 190 214 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PRINTS Pyruvate kinase family signature 215 239 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PRINTS Pyruvate kinase family signature 240 258 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi5g584 418 PRINTS Pyruvate kinase family signature 259 275 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g584 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100246052 818.535
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38