Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g59 ATGGATCATCTGAAAAAACTAAGTACTGTTCTGTGCTTTCTGCTCTTACAGTTTGGGGTTGAAGGCAGAGGACTTTCGTATAGTATTTACCAGAAATCATGCCCCCAAGTTGAGGACATTGTTCGAGCTGCCCTTGGACCCATATTTCTCTCTGATCCCAGCTCCCCTCCAGCTTTCTTGAGGCTCCTCTTCCATGACTGCCAAGTTCAGGGCTGTGATGCTTCCATCCTTGTCGATCCAGCTGGTGGGAAAACGCCATTGGAGATGGCTTCAAGCAAGAACTTCGGAGTGAGGAAAAGGGAGTCGATCAGCCTCATTAAATCAGTGGTGGAAGCTCAATGTCCTGGTACAGTTTCTTGTGCTGACATCCTCGTAATGGCGGCGAGAGATGCGGTTGCCTTCTCCGGAGGGCCATGGATTAAGGTCCCGTTTGGAAGGAGGGATTCGTCCCGTGCTACCAGCTATAAACTAGCGGATGCTTTGCTCCCTCCGGCGAACGTCGATGTCAATGGCCTGCTTCAGATCTTCACCCAGAAGGGAATGACCATAAAAGAAGCTGTTGCCATCATTGGGGCGCATACCATAGGAATAACGCATTGTTTGAATATTAGGGATCGGCTGCAGAGGCCAGAAGGAGGTGGCAGGGCCAGAGGAATGGAGCCAGGGTTCGAAGCATTCCTGAGGTTGAGCTGCCCAGAAGGATCTTTGATCTCAAATTCAACCTTTGTTGTGAATGATCCAAGTGCTTTTACCTTTGACAATCATTACTATTCTAACGCAATGCACGGCCGTGGCATACTGAGGGTCGATGCAGAAGTGTCGTCAGACTCTAGAACAGCTCCGATTGTGTCGAGTTTTGCAGCTGATCAGAGTGAATTCTTTCGGTATTTCGCTTCTGCCTTCGTGAAACTGTCTACTTCGGGTGTTCTAACTGGAAATCAGGGTGTTATTAGAAAGAGCTGCAATAGATTAGATTGA 978 48.57 MDHLKKLSTVLCFLLLQFGVEGRGLSYSIYQKSCPQVEDIVRAALGPIFLSDPSSPPAFLRLLFHDCQVQGCDASILVDPAGGKTPLEMASSKNFGVRKRESISLIKSVVEAQCPGTVSCADILVMAARDAVAFSGGPWIKVPFGRRDSSRATSYKLADALLPPANVDVNGLLQIFTQKGMTIKEAVAIIGAHTIGITHCLNIRDRLQRPEGGGRARGMEPGFEAFLRLSCPEGSLISNSTFVVNDPSAFTFDNHYYSNAMHGRGILRVDAEVSSDSRTAPIVSSFAADQSEFFRYFASAFVKLSTSGVLTGNQGVIRKSCNRLD* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 681455 682628 - Vvi5g59 Vvi5g59 786201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g59 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601|GO:0042744
Vvi5g59 325 Gene3D - 30 323 - -
Vvi5g59 325 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 Pfam Peroxidase 42 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Vvi5g59 325 Gene3D Peroxidase, domain 2 163 304 - -
Vvi5g59 325 PANTHER PEROXIDASE 25-RELATED 20 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 SUPERFAMILY Heme-dependent peroxidases 24 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g59 325 PANTHER PEROXIDASE 29-RELATED 20 322 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g59 K00430 - vvi:100261865 647.506