Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g590 ATGTCCCCGGCTGGCGAATTGAATGCCACGCCGGGTTATCAATTAAAAGTTCGTTGGGGTGGTTATCTTCATGGAGAGATCAGTGCTTACTGGGACCTTCTCCGAAGAGAACTTGGCCTTTCAGAAGAAAATCCTGGAGAGGTCAGGCTCTTGGCAAAGACCGGGGTGAAGGCTAAAGATATAGGAATACTTGTGGTGAATTGCAGTCTGTTCAACCCGACGCCATCCCTCTCTGCCATGATTGTGAACCACTACAAGCTTAGAGGCAATATTATGAGCTACAATCTCGGTGGAATGGGTTGCAGTGCTGGGCTCATATCTATAGACCTTGCCAAACAAATGCTACAGGTTCATCCCAACTCGTATGCTCTAGTAGTGAGCATGGAGAACATTACCCTCAACTGGTACTTTGGCAACAACCGCTCCATGCTCGTCTCCAACTGCCTCTTTCGCATGGGGGGAGCAGCCATCCTCCTATCTAACCGATCATCTGACCGCCGGCGTTCGAAGTATCAGCTCATCCACACCGTCCGCACCCACAAGGGTGCGGATGACAGATGTTACAACTGTGTGTTCCAGGAAGAGGATGAGACCAAGACAATTGGTGTCGCCCTCTCCAAAGACCTAATGGCCGTGGCTGGAGAAGCCTTGAAGACAAACATCACCACGCTCGGGCCATTACTGGCTTTCGAGCACTTCTGCATTCATGCTGGAGGGAGAGCTGTGTTGGATGAGCTAGAGAAGAACCTTGATCTCAGTGAGTGGCATATGGAGCCTTCAAGGATGACTCTCTATAGGTTTGGGAACACTTCCAGTAGTTCTTTGTGGTATGAACTGGCTGCGGTCTGGCGTGCCATCAGGACCATTGATCCCGTGAAGGAGAAGAACCCTTGGATGGACGAGATTGATGAGTTCCCAGTCCATGTTCCTAAAGTGGCATCCATTGTCATGAAGACCACTCAAAATTGCACCAATTGTGTTCACTCAGATCTTACGATGATGAAGATTTCTTCATTTTGTTCGGTTGTAAAACCTATTTTTCCTTTCCTGCCGTTGATTGGTTTCTCCAAAATTTTAGGAATTTTATTTTCTTTACTACCAGTGCAAGAAAATGCTTTTAGCGTGTCTTGCTTTGTAAGTTTTGTAGATGGGAGAAAAAGACGCCAAAAACTAGAAGACGATACAAGTGTTCTACAGCTGGCCTTTGGTGACCTTAGTAGAAAAGGCCTTCACATTCAATTGTCTAAACTATCAAAGTTTGGTTCTCTGTACCGTATTTTCAAGAAAAAATTCATTTTTGTTTATAAAATGTGA 1314 45.97 MSPAGELNATPGYQLKVRWGGYLHGEISAYWDLLRRELGLSEENPGEVRLLAKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIMSYNLGGMGCSAGLISIDLAKQMLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAILLSNRSSDRRRSKYQLIHTVRTHKGADDRCYNCVFQEEDETKTIGVALSKDLMAVAGEALKTNITTLGPLLAFEHFCIHAGGRAVLDELEKNLDLSEWHMEPSRMTLYRFGNTSSSSLWYELAAVWRAIRTIDPVKEKNPWMDEIDEFPVHVPKVASIVMKTTQNCTNCVHSDLTMMKISSFCSVVKPIFPFLPLIGFSKILGILFSLLPVQENAFSVSCFVSFVDGRKRRQKLEDDTSVLQLAFGDLSRKGLHIQLSKLSKFGSLYRIFKKKFIFVYKM* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6348744 6352561 - Vvi5g590 Vvi5g590 786732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g590 437 SUPERFAMILY Thiolase-like 150 284 IPR016039 GO:0016746
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 50 227 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 228 280 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 281 314 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi5g590 437 Pfam FAE1/Type III polyketide synthase-like protein 49 227 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi5g590 437 Gene3D - 48 298 IPR016039 GO:0016746
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 228 280 - -
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 281 314 - -
Vvi5g590 437 PANTHER 3-KETOACYL-COA SYNTHASE 50 227 - -
Vvi5g590 437 CDD CHS_like 49 280 - -
Vvi5g590 437 Pfam Chalcone and stilbene synthases, C-terminal domain 233 282 IPR012328 -
Vvi5g590 437 SUPERFAMILY Thiolase-like 49 169 IPR016039 GO:0016746
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g590 Vvi7g2 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g590 K15397 - vvi:100263066 506.908