Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g592 ATGGCTTTGGAGCTCGTACCAATAGGGACCATCTTGGCTGTGTTAACGAACCAAGTCCTTAAGACAGCTCAAGCTGCAAAGGATGTTCTTATTGGGAAGGAGTGTTTCAAGGTTCTGTCCAAGCACCTCTTTGATATTGAACCCGTCTTAAAGGAATTGCAGCTTCAAAAACTGAATGATTCTCAAGCTGCAAAGCAAGCTCTAGAAAACCTAGAAGAAGATGTCAAGAAAGCTAACAACTTGGTAGAGAGGTACAAAAACTGTGCCCGTTTCTACTTGCTGTTCAAATGCCGGCACATTGTCAAGGAGGTCGAAGAAGTCACAAGGGATATTGGAAGGTCTTTGGCTGCTTTATCCCTTGCAAACACTGAAGTCCTGGCAGGGATATCTGACCAGGTGAACAGGTTACAGAATGAGATGCAAAGAGTGGAATTTGAGGCCTCACAATCTCAGATCAAAATTGTTGACAAGTTGAATCAGGGTATCAATGATGCAAAACTTGACCAGGATTTTGCAAATGACATGCTTGAAGAGATAGCAATGGCAGTTGGGGTACCGGTTGAGCCGTCAGAGATAAGCAAAGAGCTAAAAAACCTCAGAAAGGAAAAGGAAGAAACTGCCAACCGGAAAGAAAGGGCAGAAGCTTTCTTCCTGGAGCAGGTTATCGAGCTGCTTTCTCGAGCAGATGCTGCAAAAGATTTTGAGCAAGTTAAAGAGCATTATGTTCAGAGGGCTCAGGTCATAGAGCGTTATGATTGCAGCAGAGAGGATATTACACCACTAAAGACTTTCATTTGTCCTATAAGTCAAACTGTGATGGTTGATCCTGTCAACCTTTGCACTGACACCACATGTGAGAGGGCAGCTATCAAAGCCTGGTTTGACCGTGGAGAGAAGACTGATCCAGAAACGGGTGATCTTCTGGGAGATTTTACTTTGAGGCCTAACCTTCGACTAAGACAATCAATTGAAGAGTGGAGGGAAATCAATTACTGCCTTAAAATCAGATCTTCCAAGGAAAAGCTGCTATCAGGTGTAGACCTCTCTGTGGAAGCAGCCCTCATCCAAATGCAGGATCTTATGAGAGAGAATTCCATTAACAAAGACTGGATTACCATAGGAGGGCTTACTGCTATTATTGTTTCTATCCTTGGAAGCTCCCACAACAAAGATGTGAAGAGAAATATTTTAATTACCTTAAAGTATGTTGTAGAAGGACATGCAAGAAATAAGGAAAAAGTGGTTGAGTTCAAGGGGTTGGATCACATCATTCCCTGCTTAGGGCGTGACTCAAGCATATCAAAGGCTGCAGTTGAATTGTTATATGAGTTATTGCAAGATAAATCTGGTTGGAACGTGTCTGTTTGTAGGAAACTCTCACAGACATGTAGTGCAATTCTTTTCCTTGTAACCCTCCTGAAAGGTCCAGTCAAGGAGTCAGCGGAGAAAGCTGAAAAAATCTTAATGAAGCTTTGTGATGAAGATGAGGAGAACATTTCTCGTGCTGCTAGGGCAGACTGGTATAAGCCACTTATTGATCGCATTATTCGAGGCTCTGAGACTTCAAGGATATCAAAGGTGAGAACACTTGTTAATATGGAACTTGTTGACCAGAATATAACGCTCCTTGGCAAGGAAGGGGTAATACCTCCCTTGCTTGAAATGGCATCTGGCAATGTGGAATCACAAGAAGCATCCTTATCTGCACTGGTTAAGCTATCAGGTTGTCATGCCAACAAAGAGCTCATTGCCGCTGCTGGTGGGGTTCCTATTATTGTGGACTTAATATTCTCTCCCCACACTGCAATAATCATTGCTAGATGTTGTGAAGTCTTGGAGAAACTTACTTCAAATGATGATGGAATTAAATTCCTTGTTGACAAAAATAAGAAGCAACTTGAGATAGAGCAGATAATAAAGAAGTTGTTAGCATTTTTACAAAGTCCAAACTCATCCAACATCATGCTGAGGCCTGCTTTACGTGCACTTCTCGGGATTTGTAAGTCTGAAGCAAGGTTTATTAAGACAGCAGTTCTTACTGCCAATGGTGTTTCCCTCATCCTTCCTCTTCTTGATGGCTCTGACCCAGAAATTAGAGAAATTGCCATAAATCTTCTGTCCCTCTTCTCTCAGCATGAACCAGAAGGCGTTGTGGAATATCTTCTCAAGCCAAAGAGGTTGGAGGCTTTAGTGGGGTTTCTTGAGAATGGTGATAAGGCTGATGTACAGATGGCAGCAGCTGGTTTATTGGCCAATCTTCCAAAATCAGAAGTACCACTCACAATGAAGTTAATCGAATTAGAAGGGTTGAATGCAATCATAAGCATCTTAAGATCTGGGACCATGGGAGCAAAAGAAAATGCTCTAACTGCACTCTTCAGGTTCACGGATCCTGCAAATCTAGACTCGCAGCGAAAGGTGGTTGAACTAGGAGCATATCCTTTGCTTGTAAGATTTCTCAGGGTTGGTTCGGAAACAGCAAAGGCAAGAGCAGCAGCCCTCATTGGTAATCTTTCCACAAGCAGTCTAGAACTTGCAGTTGTGCCTAAACCAGCTAGATGCTTGTGTTTCAGGTCATCACGCGTCCCTTTGTGCCCTGCACATGGAGGTATCTGCAGTGTGGAGACAACTTTTTGTCTATTGAAGGCAGATGCTTTGGCTGGGCTGGTAGCACTCTTGCATGAAGAGATTGATGCAACTGCTTATGAAGCAATTCAGACCCTTTCTACACTGGTGCGGGAAGACTCTCCTCAGAGAGGGGCCAATGTCTTGCATGAAGCTGATGCCATTAATCCCACACTGGAGATTTTGAATTGGGGACCGGGTCCTCTGAAGGAACAGGCTTTGGTACTATTGGAGAAAGTCCTTACAGTGAAGGAAATGGTGGAAAAGTATGGATCAATAGCTCGGTTACGTCTTGTCGATATTACTGTATCCTTTGAAAACAGACTTGGAGGTGGATGGATTCTGAATCCTCAGCAGAAATCAATTATAAAATTCAAAGACAAATATTTTGATTTAGTCTGTTCTTTGAGTCTGTAA 3042 42.87 MALELVPIGTILAVLTNQVLKTAQAAKDVLIGKECFKVLSKHLFDIEPVLKELQLQKLNDSQAAKQALENLEEDVKKANNLVERYKNCARFYLLFKCRHIVKEVEEVTRDIGRSLAALSLANTEVLAGISDQVNRLQNEMQRVEFEASQSQIKIVDKLNQGINDAKLDQDFANDMLEEIAMAVGVPVEPSEISKELKNLRKEKEETANRKERAEAFFLEQVIELLSRADAAKDFEQVKEHYVQRAQVIERYDCSREDITPLKTFICPISQTVMVDPVNLCTDTTCERAAIKAWFDRGEKTDPETGDLLGDFTLRPNLRLRQSIEEWREINYCLKIRSSKEKLLSGVDLSVEAALIQMQDLMRENSINKDWITIGGLTAIIVSILGSSHNKDVKRNILITLKYVVEGHARNKEKVVEFKGLDHIIPCLGRDSSISKAAVELLYELLQDKSGWNVSVCRKLSQTCSAILFLVTLLKGPVKESAEKAEKILMKLCDEDEENISRAARADWYKPLIDRIIRGSETSRISKVRTLVNMELVDQNITLLGKEGVIPPLLEMASGNVESQEASLSALVKLSGCHANKELIAAAGGVPIIVDLIFSPHTAIIIARCCEVLEKLTSNDDGIKFLVDKNKKQLEIEQIIKKLLAFLQSPNSSNIMLRPALRALLGICKSEARFIKTAVLTANGVSLILPLLDGSDPEIREIAINLLSLFSQHEPEGVVEYLLKPKRLEALVGFLENGDKADVQMAAAGLLANLPKSEVPLTMKLIELEGLNAIISILRSGTMGAKENALTALFRFTDPANLDSQRKVVELGAYPLLVRFLRVGSETAKARAAALIGNLSTSSLELAVVPKPARCLCFRSSRVPLCPAHGGICSVETTFCLLKADALAGLVALLHEEIDATAYEAIQTLSTLVREDSPQRGANVLHEADAINPTLEILNWGPGPLKEQALVLLEKVLTVKEMVEKYGSIARLRLVDITVSFENRLGGGWILNPQQKSIIKFKDKYFDLVCSLSL* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6369615 6377812 - Vvi5g592 Vvi5g592 786734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g592 1013 SUPERFAMILY RING/U-box 246 330 - -
Vvi5g592 1013 SMART arm_5 536 575 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 407 446 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 626 668 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 800 840 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 671 711 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 873 913 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 713 755 IPR000225 GO:0005515
Vvi5g592 1013 SMART arm_5 576 617 IPR000225 GO:0005515
Vvi5g592 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 978 - -
Vvi5g592 1013 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vvi5g592 1013 Gene3D - 337 533 IPR011989 -
Vvi5g592 1013 Coils Coil 126 153 - -
Vvi5g592 1013 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vvi5g592 1013 Gene3D - 6 122 IPR036537 GO:0007166
Vvi5g592 1013 SUPERFAMILY ARM repeat 350 525 IPR016024 -
Vvi5g592 1013 Coils Coil 193 216 - -
Vvi5g592 1013 Gene3D - 537 853 IPR011989 -
Vvi5g592 1013 Gene3D - 864 978 IPR011989 -
Vvi5g592 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 978 - -
Vvi5g592 1013 SUPERFAMILY ARM repeat 468 840 IPR016024 -
Vvi5g592 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 333 IPR013083 -
Vvi5g592 1013 Coils Coil 58 88 - -
Vvi5g592 1013 Pfam U-box domain 264 328 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g592 - - - vvi:100252782 1855.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g592 . . . . . Bpe14g01220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00598 . . Bda13g00095 . . Bma02g00814 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018110 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5