Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g593 ATGGTTGTTTTTTCCTTAGCAAATGAAAGTAAAACTAGGGCCAAGCACACCAAAACGCTCCACTCTGAAAGAGCCTGGGCAGCGCTGCCTCCGTTAGGGTTGCGGCTACCGCCGGCCTTTTCTCCTCCTGCCTTCATGGAACCTACCCCTGCCGGGGTTATCCTTGGCAAGTACAAACTCGGCCGCCTTCTCGGCCGAGGCAGCTTCGCCAAGGTGTACCAGGCCCACTCCATCACCGACGGCACTGCCGTGGCCGTGAAGATCATGGACAAGGCACGAAGTGTTGAGGCCGGCATGGAGTCTCGGATCGTTCGCGAAGCAGCGGCGCGCCGTTACTTCCAACAACTGGTATCGGCTCTCTTGTTCTGCCACCAGAACGGCGTGGCTCACCGCGACATGAAGCCGCAGAACCTTCTCCTGGACCAGGACGGTAACCTCAAGGTCTCCGACTTCGGGCTGTCCGCGCTTCCGGATCAACTTAAGAACGGCCTGCTCCACACAGCTTGTGGCACGCCTGCGTACACGGCGCCGGAGGTCGTTTCTCGGAAAGGCTACGACGGCGCAAAGGCGGACGCGTGGTCTTGCGGAGTCATACTTTTCGTCTTTCTTTCTGGCTTTCTCCCGTTCGATGATAGTAATCTCGTGACAATGTACCGGAAAATCCATCGTCGGGATTACCAGTTTCCGTCTTGGATCTCCAGGCCGGCGCGATCGGTAATATCACAGTTGCTCGATCCGAATCCTAATAAAAGGATGAGCATCGAAGCGCTGATGGAATCTGCCTGGTTCAAGAAATCTACGCCGGCGAAAAAACTTGAACATGCGAGTTCGTTTGATTCAGACATGGAATCAATGAAAGTTTGTGAATATGGTTCAGCGCCGCTAACCATGAATGCATTCGACATAATATCGATGTCGTCTGGGTTGGACCTGTCGGGGCTTTTCTTCGAAGCAGCAGCGAATAAGAGGGAGAAGAGGTTCATGTCGAGGGCATCAGCAGAGATAACTGTGGAGAAGATGAGAGAGGTTGGTGAGAAATTGGGATACGGTGTTGAGAGAGGGAAGGTTGGAAGTATAAGGAGGGAGGCGGGAAGGGTGGTTCTGTTGGTCGAAGTTTCAGAAGTTGCTCCATCATTGTTACTAGTGGAGGTGCAGGTGGTAGACGGAGGAGAATTTGAGGAGTTGAAATGGGAAATTGTGAAAGCTGGGCTTGAAGATATAGTTGTTTCATGGGAGGGTAGTGGGATGCTCACCCACATCTGTAACCTATTTTTTCTAAAATCACCAAATTTCAATGTTCCCTTGGACGGACAAAGAATTGACATCCACCACGTCACCCTTTGGTAG 1347 52.26 MVVFSLANESKTRAKHTKTLHSERAWAALPPLGLRLPPAFSPPAFMEPTPAGVILGKYKLGRLLGRGSFAKVYQAHSITDGTAVAVKIMDKARSVEAGMESRIVREAAARRYFQQLVSALLFCHQNGVAHRDMKPQNLLLDQDGNLKVSDFGLSALPDQLKNGLLHTACGTPAYTAPEVVSRKGYDGAKADAWSCGVILFVFLSGFLPFDDSNLVTMYRKIHRRDYQFPSWISRPARSVISQLLDPNPNKRMSIEALMESAWFKKSTPAKKLEHASSFDSDMESMKVCEYGSAPLTMNAFDIISMSSGLDLSGLFFEAAANKREKRFMSRASAEITVEKMREVGEKLGYGVERGKVGSIRREAGRVVLLVEVSEVAPSLLLVEVQVVDGGEFEELKWEIVKAGLEDIVVSWEGSGMLTHICNLFFLKSPNFNVPLDGQRIDIHHVTLW* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6388675 6390727 + Vvi5g593 Vvi5g593 786735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g593 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vvi5g593 448 Gene3D Transferase(Phosphotransferase) domain 1 104 292 - -
Vvi5g593 448 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 49 108 - -
Vvi5g593 448 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 105 413 - -
Vvi5g593 448 Gene3D Kinase associated domain 1, KA1 294 409 - -
Vvi5g593 448 CDD CIPK_C 298 404 - -
Vvi5g593 448 SMART serkin_6 58 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g593 448 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Vvi5g593 448 Gene3D Transferase(Phosphotransferase) domain 1 46 103 - -
Vvi5g593 448 PANTHER SERINE/THREONINE KINASE 49 108 - -
Vvi5g593 448 PANTHER SERINE/THREONINE KINASE 105 413 - -
Vvi5g593 448 Pfam NAF domain 294 352 IPR004041 GO:0007165
Vvi5g593 448 SUPERFAMILY Protein kinase-like (PK-like) 54 272 IPR011009 -
Vvi5g593 448 ProSiteProfiles Protein kinase domain profile. 1 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g593 448 ProSiteProfiles NAF domain profile. 292 316 IPR018451 GO:0007165
Vvi5g593 448 Pfam Protein kinase domain 101 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76670 PF00069 Pkinase 7.40E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g593 K12761 - vvi:100247675 619.772