Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g594 ATGTTTGTGAAGCTTCACTGTCTGGATACCAACTGTTTCCAGGTGTTGTCCGCTAGGGGCTCACCAAACATAGGAGATTCCGCGTCCTCGTCGGACAAGGTTGAATTCATCAAGAAACGTAGAGTACAGAAAGTGCCTGAGAGTCCCAATGGAGGGGTCAAGAGATTTAGTAGAGTTTGTAGACAAACCCATCATGATAGGAGAAGTGGTGCATCCCAGAAACCAGGGTTGAACCAACATGGTTTCGTGAAGGATCCTGAGAGAAAGCAGAGAAGGCACAGTGGGGGTGATGGTAGAACCATAAATAAGAGGGGTGGTGTGGTAGGATTCCGATCGGGGGATGCAAATGATTTGGTGGAGAAGGTGAGCACCAACTGTTCGACAAAATGGCTCTCTTATGGAGGATGCATTCCATCGATTTTGCGAGCGTTGGAAACAGTAAAGGATTTGGATGAGGCTTTAAGTCCTTGGGAAGAGAGCCTTAGTAACAAGGAAAGAAGCATAATTTTGAAGGAGCAGTCCTGTTGGGAAAGGGCTTTGGAGATTTTTGAGTGGTTGAAGAAAAAGGGTTGTTACGAATTGAATGTGATTCATTATAACATCATGCTCAGGATTCTTGGGAAAGCACGGAAGTGGCACCATGTTGAGAGTCTGTGGGATGAGATGATGAGCAGAGGGATTACACCGGTTAATTCCACTTATGGTACCTTAATTGATGTTTATAGCAAAGGTGGCCTTACGGAAGAAGCGCTTCATTGGTTGGATAGGATGAACAAACAAGGGATGGAACCTGATGAAGTAACTATGGGGGTTGTTGTTCAAACATACAAGAAGGCTGGAGAGTTTAAAAAAGCAGAGCAATTCTTCAAGAACTGGTCATTGGAAAGTGCTTCTCAACCTCATGTTTGTTTAAGCTCGTACACTTATAATACCCTGATTGATACATATGGCAAGGCTGGCCAGCTTCGAGAAGCATCTGACACTTTTGCCTGGATGCTTAGAGAAGGGATTATCCCAAACACAGTGACATTCAATACAATGATTCACATTTGTGGCAATCATGGCCAGCTAGAAGAAGCGGCTTCGTTGATGCAGAAAATGGAAGAACTCCGATGCCCTCCTGACACAAGAACATATAATATTCTCATCTCCCTTCATGCCAAGCACAATAATATTGACAGGGCAGCAAGCTACTTTAAGAAGATGAAGGAGGCTCGCCTTGAGCCAGACCTTGTGAGTTACCGCACCCTCTTGTATGCATTCTCAATAAGGCATTTAGTTGGTGAAGCTGAAATCCTTGTCTCAGAGATGGATGAAAGGGGTCTTGAGATTGATGAATTCACCCAATCGGCTCTGACTAGAATGTACATAGAAGCAGGGATGCTCAAGAAATCTTGGTTGTGGTTTAGGAGGTTTCATCTTGAAGGGAATATGAGTTCTGAGTGCTATTCTGCCAATATTGATGCATATGGGGAGCGTGGCCATATTTTGGAAGCTGAGAAAGCTTTTCTTTGCTGCAAAGAGAGTAGAAAACTGAGTGTCCTTGAGTTCAATGTGATGATCAAAGCTTACGGGATCAGCAACAGATATGAGAAGGCATGTCAGTTGATTGATAGTATGGAGAATCATGGTGTACTGCCAGACAAATTTAGCTATAATTCTCTAATACAAATATTAGCCAGTGCTGACCTCCCACACAAAGCAAAGTTCTATTTAATGAAGATGCAGGAGACACAACTGGTAAGTGATTGCATACCATATTGTGCTGTGATCTCAAGCTTTATTAAATTAGGTCAACTGGAAATGGCAGAAGGACTATTCAAGGAGATGATTGGATATAATGTGCAGCCTGATGTTGTCGTTTATGGCATTTTAATAAATGCTTTTGCTGATGTTGGGAATGTCAGAGAAGCTGTGAATTATGTTAATGCACTGAGAAATGCAGGTTTACCCATGAATGCTGTTATATATAACTCCTTGATCAAGCTTTATACCAAAGTTGGTTACTTAGAAGAAGCACAGGAAGCATACAAAATGCTTCAAGCATCAGAAGTGGGTCCAGATGTGTATTCTTCAAATTGTATGATTGACCTCTACAGCGAGAGGTCCATGGTTAAACAAGCAGAAGAAATTTTTGAAAGCTTGAAGAGAAAAGGGGATGCCAATGAGTTTTCATTTGCAATGATGTTGTGTATGTACAAGAGAATTGGGAAGTTAAAGGAAGCCTTTCAGATTGTACAAAAGATGAGAGAACTGGGACTTGTAACAGATTTGTTGAGTTATAATAATGTGCTTGGGTTCTATGCAATGGACGGGAGATTTAAGGATGCAGTGGGAACTTTTAAGGAGATGATAGAAGCTGCCATTCAACCGGATGATTGTACATTCAAATCACTGGGAGTTGTGCTAGTGAAATGTGGAATTCCAAAGCAGGCTGTTGGCAAACTGGAAATGACTAGGAAGAAGGATCCTCAGAGTGGCCTGCAGGCATGGGCATCAATCCTCTTTTCTGTGGTTGAGGTGGATGACACTGATGCTCAGATATCCTGCTCGGCTACCAGCTTTTCAAGTACAGTTTGTGTTAGCTAA 2589 42.37 MFVKLHCLDTNCFQVLSARGSPNIGDSASSSDKVEFIKKRRVQKVPESPNGGVKRFSRVCRQTHHDRRSGASQKPGLNQHGFVKDPERKQRRHSGGDGRTINKRGGVVGFRSGDANDLVEKVSTNCSTKWLSYGGCIPSILRALETVKDLDEALSPWEESLSNKERSIILKEQSCWERALEIFEWLKKKGCYELNVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNKQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWFRRFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKLSVLEFNVMIKAYGISNRYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKGDANEFSFAMMLCMYKRIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDCTFKSLGVVLVKCGIPKQAVGKLEMTRKKDPQSGLQAWASILFSVVEVDDTDAQISCSATSFSSTVCVS* 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6392294 6394940 - Vvi5g594 Vvi5g594 786736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Vvi5g594 862 SUPERFAMILY HCP-like 276 534 - -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 722 756 IPR002885 -
Vvi5g594 862 Pfam PPR repeat family 339 384 IPR002885 -
Vvi5g594 862 Pfam PPR repeat family 517 560 IPR002885 -
Vvi5g594 862 Pfam PPR repeat family 195 242 IPR002885 -
Vvi5g594 862 Pfam PPR repeat family 587 630 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi5g594 862 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 61 847 - -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 725 757 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 342 376 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 307 341 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 199 229 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 378 410 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 587 619 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 760 792 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 517 548 IPR002885 -
Vvi5g594 862 TIGRFAM PPR: pentatricopeptide repeat domain 233 266 IPR002885 -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi5g594 862 Gene3D Tetratricopeptide repeat domain 292 426 IPR011990 GO:0005515
Vvi5g594 862 Gene3D Tetratricopeptide repeat domain 427 686 IPR011990 GO:0005515
Vvi5g594 862 Pfam PPR repeat 691 719 IPR002885 -
Vvi5g594 862 Pfam PPR repeat 307 337 IPR002885 -
Vvi5g594 862 Pfam PPR repeat 655 681 IPR002885 -
Vvi5g594 862 Pfam PPR repeat 412 442 IPR002885 -
Vvi5g594 862 PANTHER OS03G0162900 PROTEIN 61 847 - -
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vvi5g594 862 MobiDBLite consensus disorder prediction 61 106 - -
Vvi5g594 862 Pfam Pentatricopeptide repeat domain 745 799 IPR002885 -
Vvi5g594 862 MobiDBLite consensus disorder prediction 81 99 - -
Vvi5g594 862 Gene3D Tetratricopeptide repeat domain 139 290 IPR011990 GO:0005515
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Vvi5g594 862 Gene3D Tetratricopeptide repeat domain 720 852 IPR011990 GO:0005515
Vvi5g594 862 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Vvi5g594 862 SUPERFAMILY TPR-like 349 787 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g594 - - - vvi:100258082 1724.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g594 Blo01g00101 . . . . . . Bma05g01080 . Cmo17g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00871 . . . . . . . Cma17g00193 . Car17g00171 Cpe12g00165 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011985 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30