Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g597 ATGAAGCTCAAACCCCTAAACGACACCGTTTCTTCTCTCCTGCTTTTCTTCTTCCTCTGCTCCCTCCATCTCCACTACTCCCAGGCCCAGCCTGAACCCAACGCCACGGGCTACCCCTGCTCCGCCAACCTCTCCTCCTACCCCTGCCACACCTTCGCCTTTTACACTGCCACTTCTCCCAACTTCCTCGACCTAGCTTCCATTGGCGACCTCTTCTGGGTCAGCCGCCTCATGATCTCCGAGCCCAGCAACATCTCCTCCCCGTCCAACCCCCTTGTCGCCGGTCAAAGCCTCTTCGTCCCTCTCAATTGCTCCTGCAACTCCGTTAACACCACCACCGCTATCTCTTACGCCAATCTCAGCTACACCATCAAGAGTGGCGACACCTTCTACCTCGTCTCCACTTTCAGCTTCCTCAACCTCACCACCTACTATTCCGTCGAAATTGTGAATCCTACTCTCGTTCCCACTGATCTCGATGTCGGCGATAAAGTCATTTTCCCGATCTTCTGCAAGTGCCCCAACGAAACCCAGTTAAGAAACGGAGTGAATTTTCTCATTTCCTATGTGTTTCAGCCTTCTGATAACTTGACTGGTGTTGCTGCATCGTTGGGGTCAGATACAGCGTCTATAATAGACGTTAATGGAGATAATATTCAGCCCTTCCAGACCATTTTCGTGCCGGTTTCCCGGCTTCCAAACATATCACAGCCTAATGTGACCGCTTCGGTGGCGACCTCTGTTCGGAAGGTTGAGAGAAAGGGGGTGATTATAGGATTGGCAATTGGGTTGGGAGGAGATAAGGAGAGGCCTTTGGTTGGAAGAGGGACGGGGTTGAAGGCGGAGGAGGTGAATTTAATGGCCGATGTTTCGGATTGTTTGGACAAGTATAAAGTGTACGGGATTGAAGAATTGAGGGATGCAACTGGTGGGTTTAGTGAGCGTTCCCTGATCCAAGGGTCTGTGTATAAAGGGTCTATTGATGGAGAGCTCTATGCCATCAAGAAGATGAAGTGGAATGCCTATGAAGAGCTGAAGATCTTGCAAAAGGTGAACCATGGCAATCTGGTGAGGCTTGAGGGCTTCTGCATAGACCCTGAAGATGCAACTTGCTATCTAGTTTACGAGTTTGTTGAAAATGGATCTCTACAGTCATGGTTGCATGGAGACAGGGATGAAAAACTAAACTGGAAAAATAGGCTAAGAATTGCTATAGATGTTGCAAATGGCCTCCAATACATTCATGAGCATACGAGACCGCGAGTTGTGCATAAAGACATCAAAAGCAGCAATATTCTATTAGATGGAAACATGAGAGCCAAGATTGCCAATTTCGGATTAGCGAAATCTGGCTGCAATGCCATAACCATGCACATTGTTGGAACCCAAGGTTATATTGCACCAGAGTATCTGGCAGATGGTGTAGTTTCAACAAGAATGGATGTTTTCTCGTTTGGGGTGGTTCTGCTTGAGCTGATCTCAGGGAAGGAGGCAGTGGACGAAGAGGGAAGGGTTCTGTGGATGAGCGCAAGAGGAATTTTGGAGGGGAAGGACGAGAAGGTGAAGGCAAAGAGAGTGAAGGATTGGATGGACGAAGGTCTTCTTAGGGAGTCTTGCTCCATGGACAGTGTGATCAATGTGATGGCTGTTGCCACTGCTTGTACACACAGAGATCCTTCAAAGAGGCCCAGCATGGTGGATATTGTGTATGCTTTGTGCAAGTGTGAGGATTTCTTCTTTGACATATCTGAAGATGGATTGGCTCCCGCTGCAGTTATAGCTAGATAG 1788 48.49 MKLKPLNDTVSSLLLFFFLCSLHLHYSQAQPEPNATGYPCSANLSSYPCHTFAFYTATSPNFLDLASIGDLFWVSRLMISEPSNISSPSNPLVAGQSLFVPLNCSCNSVNTTTAISYANLSYTIKSGDTFYLVSTFSFLNLTTYYSVEIVNPTLVPTDLDVGDKVIFPIFCKCPNETQLRNGVNFLISYVFQPSDNLTGVAASLGSDTASIIDVNGDNIQPFQTIFVPVSRLPNISQPNVTASVATSVRKVERKGVIIGLAIGLGGDKERPLVGRGTGLKAEEVNLMADVSDCLDKYKVYGIEELRDATGGFSERSLIQGSVYKGSIDGELYAIKKMKWNAYEELKILQKVNHGNLVRLEGFCIDPEDATCYLVYEFVENGSLQSWLHGDRDEKLNWKNRLRIAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDGNMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYLADGVVSTRMDVFSFGVVLLELISGKEAVDEEGRVLWMSARGILEGKDEKVKAKRVKDWMDEGLLRESCSMDSVINVMAVATACTHRDPSKRPSMVDIVYALCKCEDFFFDISEDGLAPAAVIAR* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6424262 6430178 + Vvi5g597 Vvi5g597 786739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g597 595 ProSiteProfiles Protein kinase domain profile. 267 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g597 595 SMART serkin_6 312 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g597 595 SMART LysM_2 121 168 IPR018392 -
Vvi5g597 595 SMART LysM_2 188 228 IPR018392 -
Vvi5g597 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 265 - -
Vvi5g597 595 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 282 593 - -
Vvi5g597 595 Pfam Protein kinase domain 320 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g597 595 PANTHER - 10 265 - -
Vvi5g597 595 PANTHER - 282 593 - -
Vvi5g597 595 Gene3D Transferase(Phosphotransferase) domain 1 378 582 - -
Vvi5g597 595 Gene3D Phosphorylase Kinase; domain 1 283 377 - -
Vvi5g597 595 SUPERFAMILY Protein kinase-like (PK-like) 300 572 IPR011009 -
Vvi5g597 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g597 - - - vri:117914713 1137.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76671 PF00069 Pkinase 1.40E-39 CL0016 Vvi PK