Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g598 ATGGCCACCAACCCGCCCGAAGGTTACGCCGATGATTTCCTGGAACAAATCCTCGCAATTCCCTCCTATCCTGGACACGACCCTAATATGGTGGGAACGGGTTCTACCATGGTGCTGCAGCTGAGTTCAGGCGACGGCTCAGGCCACGTCGCCGGAGGTGGCTTCCAGGGGCCGGTCTTTCCGTTAGGTCTGAGCTTGGAGAGCGGGATTCCGGCGACACAGGTGGCGCCAGGAAGTGGCGAGCGGTTTCGAGATGACGTTGATGCCAGAGGTTCTTCAGGGAGGAGCGAGAGAGAGTCGGTGCATTTGGATGGTTTGTTTCCGGCGTATGGACATGTACAGTCTCTCTCCGTCCGACCCGCCGTTCCTCAGGTTCACCAGGCTTTTCATGGCCAGCCAACTCCTGTCCCAATTACTGCTGCACCACACCCACCAGCTATCCGCCCAAGGGTGCGTGCTCGGCGTGGACAAGCCACTGATCCTCACAGCATTGCTGAGCGGCTACGTAGAGAGAGGATAGCAGAAAGAATGAAGGCTTTGCAAGAACTTGTCCCTAGCTCCAACAAGACGGATAGGGCTGCAATGCTTGATGAAATTGTGGACTATGTGAAGTTCCTAAGGCTCCAAGTCAAGGTTTTGAGCATGAGTAGACTGGGAGGTGCTGGTGCAGTGGCACAACTCGTGGCTGACATCCCATTGCCAGCAGTTGAGGGAGAAACGGGTGAAGGTGGAAGCAACCAGCAAGCCTGGGATAAATGGTCTAATGATGGCACAGAACGAGAAGTAGCAAAGCTCATGGAAGAAGATGTTGGAGCTGCTATGCAGTTCCTCCAATCCAAAGCACTGTGCATCATGCCCATATCACTTGCTGCAGCAATATACCCTGCACACCAAACTGATACCCCTACGCTCATCAAGCCTGAGCCAAATGCTCCATCCTAG 942 54.56 MATNPPEGYADDFLEQILAIPSYPGHDPNMVGTGSTMVLQLSSGDGSGHVAGGGFQGPVFPLGLSLESGIPATQVAPGSGERFRDDVDARGSSGRSERESVHLDGLFPAYGHVQSLSVRPAVPQVHQAFHGQPTPVPITAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSSNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADIPLPAVEGETGEGGSNQQAWDKWSNDGTEREVAKLMEEDVGAAMQFLQSKALCIMPISLAAAIYPAHQTDTPTLIKPEPNAPS* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6435127 6441609 + Vvi5g598 Vvi5g598 786740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g598 313 SMART finulus 163 212 IPR011598 GO:0046983
Vvi5g598 313 MobiDBLite consensus disorder prediction 81 99 - -
Vvi5g598 313 Gene3D - 152 214 IPR036638 GO:0046983
Vvi5g598 313 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 300 - -
Vvi5g598 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 216 IPR036638 GO:0046983
Vvi5g598 313 Pfam Helix-loop-helix DNA-binding domain 162 206 IPR011598 GO:0046983
Vvi5g598 313 MobiDBLite consensus disorder prediction 74 99 - -
Vvi5g598 313 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 300 - -
Vvi5g598 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g598 Vvi7g9 ECH
Vvi5g598 Vvi7g2 ECH
Vvi5g598 Vvi14g507 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14859 PF00010 HLH 3.20E-08 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g598 - - vvi:100264830 560.066