Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g60 ATGTCTTCACCATTCCTTCAAGCCATTCACATTGCCTTTCTGGTCATTGTCTCCGTCTCCATCCCTGCATCCCATGCAGCACATAACAAATCCCCCAATCTCAATACAACAGTGTTAGATTCTCCTCTCTTGACGAAAAAGATTGGTGCCAACCACACGATCAAGGTCGATATCAATGGCAGAGGAGACTTCACTTCTGTTCAAGCTGCCATTGACTCTGTTCCTGAAGGGAATGGCAAGTGGACTATCATCCATATCAGAAAAGGGGTGTACAAAGAGAAGGTTCACATACCAGAGAACAAGCCTTATATCTTCCTGAGAGGAAATGGGAGAGGCAGGACTTCCATCGTTTGGTCCCAAAGCTCCAAGGACAACATAGAGTCTGCAACTTTCAAAGTTAAAGCCCCCCATGTTGTTATCTTTGGTATCAGCTTCAAGAATGATGCTCCGACCGGGGTCGCCCAGACCTCACAGAACCAGTCAGTGGCAGCATATGTGGGGGCGGAGATGGTAGCATTCTACCACTGCTCCTTCTACAGTACCCACAACACTCTCTTTGATTACAAAGGCAGGCACTTCTACCACAACTGCTACATCCAGGGCTCAGTTGATTTCATCTTTGGCCGCGGAAGATCCATCTTCCATAACTGTGAGATATTCGTGATTGCAGACCAAAGGGTGAAGATCTCAGGATCCATCACAGCTCAGAACAGGCAAAGTGGAGAAGATAACAGTGGGTTTGTGTTTGTGAAAGGGAAAGTGTATGGCATTGGAGGAGTATACTTGGGTAGAGCCAAAGGCTCCCATTCTAGAGCGGTTTTTGCGAAGGTTTATATGTCTAGGACAATAGTCCCGCAGGGCTGGACCAAATGGAGCTATACTGGCAGCACCGAGAACCTATTCCAAGCGGAGTACAAATGCTATGGACCAGGAGCAGAAACAGAGAACCGGGCTTCATGGTCTTTACAGCTCACTGATGAAGAAGCTGCTCCTTACCTCTCCGTGGACTTCGTGGATGGCCAGAAATGGCTACCGGCATGGCTATGA 1047 47.95 MSSPFLQAIHIAFLVIVSVSIPASHAAHNKSPNLNTTVLDSPLLTKKIGANHTIKVDINGRGDFTSVQAAIDSVPEGNGKWTIIHIRKGVYKEKVHIPENKPYIFLRGNGRGRTSIVWSQSSKDNIESATFKVKAPHVVIFGISFKNDAPTGVAQTSQNQSVAAYVGAEMVAFYHCSFYSTHNTLFDYKGRHFYHNCYIQGSVDFIFGRGRSIFHNCEIFVIADQRVKISGSITAQNRQSGEDNSGFVFVKGKVYGIGGVYLGRAKGSHSRAVFAKVYMSRTIVPQGWTKWSYTGSTENLFQAEYKCYGPGAETENRASWSLQLTDEEAAPYLSVDFVDGQKWLPAWL* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 686535 688008 + Vvi5g60 Vvi5g60 786202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g60 348 Gene3D - 48 347 IPR012334 -
Vvi5g60 348 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Vvi5g60 348 SUPERFAMILY Pectin lyase-like 50 346 IPR011050 -
Vvi5g60 348 PANTHER PECTINESTERASE 67-RELATED 6 347 - -
Vvi5g60 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 347 - -
Vvi5g60 348 Pfam Pectinesterase 55 340 IPR000070 GO:0030599|GO:0042545
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g60 - - - vvi:100267053 705.671
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g60 Vvi14g93 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g60 . . . . . . . . . . . Cma14g01588 . Car14g01398 Sed02g1135 . Cpe03g01325 Bhi01g01093 Tan10g1080 Cmetu06g1917 . Hepe05g1373 . Lcy11g1335 . . . . . . . . . . Cone4ag0104 Lsi05g01418 . . Cme06g00792 . Blo07g00142 . . . Bpe13g00699 . . . . Cmo14g01618 . . . . . . . . . . . . . Cla05g00709 Cam05g0776 Cec05g0784 Cco05g0777 Clacu05g0766 Cmu05g0732 Cre05g0806 . Csa03g01521 Chy06g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012037 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30