Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g602 ATGAATCCTCCTATTTTGCATATCATCCACAACTGCAAAACTCTCAAATCCTTGAAATCCATCCATGCCCGTCTTTTGATCGAAAGCTCAGTTGCTTCCTCGGAGTTTGTTATCAACAAACTTCTCCGTCTCTACTCACGCTTTGGAGCCACTGACTACGCCCATAAGGTTTTTGATGAAATTACTCAGCCAAATGCTTATCTATGGACATCCTTGATTCATGGGTATGTTGAAAATCGTCAATATGATGAAGCTTTTTCTCTGTTTATCCAAATGCGGAGGGAACCCATCTCAGTTTTGAATTTCACTATTTCTTCTGTGCTCAAGGCTCTTGCCCGGCTTACAAGATTCAAAGGTGGGCAAGCTGTTTATGGGTTTGCATTCGATGAGATGTGCGAGAAGGATATTGTGTCTTGGAATATGATGATTTCTGGTTATGGGAATAATGACAGAGTTGATATTGCGCGCAAGTTTTTTGATAGAATGCCAGAGAGGAATGTGGTTTCATGGACTAGCATGATTTGTGGATATGTTAAGGCTGGTGACATGGCAGAGGCACAGGTTCTTTTTGATTCAATGCCTGTCAAAGACTTGGCATCATGGAATGTGATGGTTTCTGGGTACATGGATATTGGTGATTATACTAATGGTGCAAGATGTTTATTTGATCAGATGCCCATGAAGAATCTCGTCACTTGGTCTACCATGATTGGAGGTTATGCTAGAAATGGACAGCCTCTTAAGGCTTTGGAATTGTTTGAACGGTTCAAGGAGCAGGACATCAAGCCAGATGAGACTTTTATTTTGGGAATCATCTCAGCTTGCTCGCAGTTGGGGATTATAGATGCAGCTGAATCGATTATTCACAACTATGTGGGGCCCTCACTTCTTTCTGATCTGAGAGTTTTCACTAGTTTGATAGACATGTATGCAAAATGTGGCAGCATTGAAAAGGCTCTGCAAATGTTTGAAATGGCTCACCCAAAAGACTTACTATGCTATAGCACAATGATTGCAGCCTTGGCAAATCATGGATTGGGCCGTGATGCTATTTTCTTGTTTGATAAAATGCAAAGGGCAAATATAAAACCTGATAGTGTGACTTTTCTTGGAGTTCTGACTGCTTGTAATCATGGAGGCCTTGTTGATGAAGGCAGGAAGTACTTTAAACAAATGACTGAAGAATTTGGAATTCAACCCTCAGAAAAGCATTATGCATGTGTGGTTGATCTTCTGGGTCGTGTTGGATGCCTTGAGGAGGCATATAACCTTATACGTAATATGCCAATAGCACCACATTCGGTTGTATGGGGTGCTTTGCTTGCAGCTTGTAGGGTCCACTGCAATGTTCAGCTGGCTGAAGTTGCAGCAGCTGAGTTATTCAAGATTGAACCAGATAACTCTGGTAATTATATTCTTTTATCCAATATTTATGCTGCTGCTGGAAGATGGGGCAGTGTTGCTAAAGTGAGAGCAAAGATTAGGGAGCATCGGGTGAGAAAGAATAGAGGCTCAAGCTGGATTGAGTTGAGCCATGTAGTTCATGAGTTTGTTATGGGAGATATGTCACATACAGATTCAGATAGCATATCGTTGATCTTGTATTTACTCTGTGAAGATATGAAACTTTCAGGATATTTAATTGACTCCTGA 1653 41.08 MNPPILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGYLIDS* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6530594 6532523 + Vvi5g602 Vvi5g602 786744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g602 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 127 187 - -
Vvi5g602 550 Pfam PPR repeat 302 324 IPR002885 -
Vvi5g602 550 Pfam PPR repeat 231 260 IPR002885 -
Vvi5g602 550 Pfam PPR repeat 137 167 IPR002885 -
Vvi5g602 550 Pfam PPR repeat 168 196 IPR002885 -
Vvi5g602 550 Pfam PPR repeat family 330 376 IPR002885 -
Vvi5g602 550 Pfam PPR repeat family 64 113 IPR002885 -
Vvi5g602 550 Pfam E motif 447 509 IPR046848 -
Vvi5g602 550 Gene3D Tetratricopeptide repeat domain 4 128 IPR011990 GO:0005515
Vvi5g602 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 127 - -
Vvi5g602 550 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 191 548 - -
Vvi5g602 550 PANTHER OS07G0578800 PROTEIN-RELATED 4 127 IPR045215 GO:0003723|GO:0009451
Vvi5g602 550 PANTHER OS07G0578800 PROTEIN-RELATED 191 548 IPR045215 GO:0003723|GO:0009451
Vvi5g602 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Vvi5g602 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 65 99 IPR002885 -
Vvi5g602 550 PANTHER OS07G0578800 PROTEIN-RELATED 127 187 IPR045215 GO:0003723|GO:0009451
Vvi5g602 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 137 168 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 302 325 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 67 95 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 333 366 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Vvi5g602 550 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Vvi5g602 550 Gene3D Tetratricopeptide repeat domain 197 294 IPR011990 GO:0005515
Vvi5g602 550 Gene3D Tetratricopeptide repeat domain 129 196 IPR011990 GO:0005515
Vvi5g602 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Vvi5g602 550 Gene3D Tetratricopeptide repeat domain 298 528 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g602 - - - vvi:100266533 770.385
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069830 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1