Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g606 ATGGATTTCGTCGAATTGGAGACGATCGAAGGCCTCAGGTGGACCTGGAACTCATGGCCACCTTTCAAACCAGATGCATCGGCTCTAGTAATCCCACTCAGCATAATGTGTACCCCCTTGATGCAATCGAGCGAGCTTCCTTTGCTGCAATACGACCCTCTCATCTGCAGTCGGTGCGGCGCCAACTCGTTTCCGCGTTCCTATAGTGGCATCGGAGAGAACAATCTTCCAGCGGAGCTGTTCCCCACTTACAGCACCGTCGAGTACCAACTCGTATCGTCCTTTTCATCGTCCTCGTTGTCGGGTGCGGATTCTCGTGTGTTGGGGCCGGCGTTTGTGTTTGTAGTGGACGCCTGCTCGGCTGCGGAGGAGCTTCGGGCGCTTAAGAATGAGTTGTTGCATGTTCTTGCGCAGTTGCCGGAAAATACTATGGTGGGGTTGGTTACTTTTGACTCGATGGTGTGTGTTCATGATCTTTGTTTCGCTGAGTGCTCGAGGGTTGTGCTGTTTCATGGTGACCGTGAACTCTCATCGGATCAGATCCAAGAATTCTTGGGTATTACTCGCACAAAGCAGCAGCAACTTGGAAAGACACCGACTGCTGAAAAGCAAACTTTTCTGGTTCCAGTATCTGAATGTGAGTTCAGTATCACAACAGCGATTGAAGAGATTCATTCTTCAGTGCAGGTCTTGCCAGGCCACCGCCCTCTTAGGTCCACAGGAGCAGCGATATCAGCTGCCATTGGACTTCTAGAAGGATGCTTGGTGAACAAAGGTTCACGGATCATGGTCTTTACATCCGGGCCTGCAACAGTTGGCCCTGGGATTATTGTAAACTCAGACCTGAGTAATGCCATCAGAACTCACCGAGACCTCATTAACGGGAATTTGATGATGTATTTTGATTCAACTATTGAGATAGTGACCACAAAAGATGTTAAACTTTGTGGAGCTCTTGGACCTTGTGTGTCCCTTCGGAAAAAGAACAGTTTAGTGAGTGAGAATGAGATTGGTGAGGGTGGTACTTATATGTGGAAGTTGGGCACACTGACTAATAAAACATGCATTGCTTTCTTCTTCCAAGTGGGTGATGAGCAGAAAGTTCAACCCGGTTCTGCATTCTTCATACAGTTCATAACACGTTATCTACATGGGAACATGGGAATGCGGAAAAGGGTTACCACTGTGGCAAGAAGATGGGTGGGGAAGCACTCACCAGAAATCGCCGCTGGGTTTGATCAAGAAGCAGCAGCTTCAGTCATGGCCAGACTTGCCATCCATCGAGCAGAGACGTGTTATGCTCGAGATGTCATCAGATGGCTGGATAATGAACTGATCCGTTTTGCTTCCAAGTTTGGGGACTACATACAAGAAGATCCATCTTCCTTTCGCCTGTCAGCCAATTTCTCTTTGTACCCACAGTTCATGTACCATTTAAGGAGGTCACAGTTTATTGATATCTTTAATAGCAGTCCTGATGAAACTGCTTTCTTCCGACTGATGCTGAACCGTGAAGGGGTGGTTGGTTCTGTTATAATGATACAACCCACCCTTTTCCAATACTCTTTTGATGGGCCTCCTGTTCCAATTGCTCAGTGGCGGAAGCTTGGGTATGACAGGGACCCAAACAATGAGAATCTGCGAAAGCTGTTGGAAGCCCCAGAGCTTGATGCAGAGCAAGTAGTAGCAGAACGGATTCCAGTGCCCAAACTTATAAAGTGTGACCAACACAGCAGTCAAGCAAGATTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAGCATTCAACACACACGGATGGTATGGATTTCATATTTACTGATGATTTTAGCTTGCAAGTTTTTATTGAACACTTGCAGACCTTGGCAGTACAAGTTCTGGACTCTTCCATTCACTGGAACTATGACCCCTCTTCCCAGTTGGTCCAATTGGCTTATAGGAAAACTGGAGTGGCTCCTTCCACATGGATTTCCTGGGCCATCAATCCTACTACCAGGGGCATGGTTGGATCCCAGGCGCTTGTTGCTTTCCAGGGAACTGATGGGAGCATGACCGTTTACACCTCTCCAATAACAAGCTACCAAACTCAGCTGCAACAAGGCAGTTTGAGTTTCCCGGTCTTTGATCTTTCTGCTATGCAGGAAAACTGCGATATGATTATATTTGCTACCATACAGCTTCCTGGGAACACCACAATGGTGAACCACGTCTGGCAAGAAGGCCCGGTCTATGGGAATGTTCCTGGGATTCATGCGTTGTCTGGAGCTAACATGCAATCCTTTGGAAGCATTGATTTTCTTTCGAAAAAGACTGCAGCCACTAGAGGATCAGGAAAGTCATGGGATATGAAAACTGTTGATGTCCTGGTGAATACAATCAGTTGGGGTACTCTAATGCCTATTGGAGTCATCATAGCAAGGTACCTAAAAGCATCCAACACAGGTCCAGCTTGGTTCTACCTCCATGTTTTCTGCCAGTGCACTGCCTATGCTGCCGGTGTTTTTGGTAGGGCAACCGATCTCATATTAGACTATCGGTCACTAGGAATCCAACACACCATCCACAGATACATCGGCATTGCCCTCATTGTTTCTGCCACACTTCAGGTTCTTGCTCTCTTCCTGAGGCCCAAGGAGGAACATAAACTACGACAAATATGGAACATATACCACCATTTGATTGGCTACGGCACCATCATCCTGGGCGTGTTCAATGTTTTCAAAGGCTTTGATATATTGAAACCCCAGAAGAAGTGGAAGATTATTTACATCCTTGTAATTTCTGGGTTGGGCATCATTTCAGTTGGGCTGGAGTTTATTATGACATATGTGAAGTCTAAGCCGAAGAAGGCCGTAGTTCATGGCCAGGCGCCACCCAATCCACAAGAAGAGGAAGCTTAG 2901 46.91 MDFVELETIEGLRWTWNSWPPFKPDASALVIPLSIMCTPLMQSSELPLLQYDPLICSRCGANSFPRSYSGIGENNLPAELFPTYSTVEYQLVSSFSSSSLSGADSRVLGPAFVFVVDACSAAEELRALKNELLHVLAQLPENTMVGLVTFDSMVCVHDLCFAECSRVVLFHGDRELSSDQIQEFLGITRTKQQQLGKTPTAEKQTFLVPVSECEFSITTAIEEIHSSVQVLPGHRPLRSTGAAISAAIGLLEGCLVNKGSRIMVFTSGPATVGPGIIVNSDLSNAIRTHRDLINGNLMMYFDSTIEIVTTKDVKLCGALGPCVSLRKKNSLVSENEIGEGGTYMWKLGTLTNKTCIAFFFQVGDEQKVQPGSAFFIQFITRYLHGNMGMRKRVTTVARRWVGKHSPEIAAGFDQEAAASVMARLAIHRAETCYARDVIRWLDNELIRFASKFGDYIQEDPSSFRLSANFSLYPQFMYHLRRSQFIDIFNSSPDETAFFRLMLNREGVVGSVIMIQPTLFQYSFDGPPVPIAQWRKLGYDRDPNNENLRKLLEAPELDAEQVVAERIPVPKLIKCDQHSSQARFLLAKLNPSVTQHSTHTDGMDFIFTDDFSLQVFIEHLQTLAVQVLDSSIHWNYDPSSQLVQLAYRKTGVAPSTWISWAINPTTRGMVGSQALVAFQGTDGSMTVYTSPITSYQTQLQQGSLSFPVFDLSAMQENCDMIIFATIQLPGNTTMVNHVWQEGPVYGNVPGIHALSGANMQSFGSIDFLSKKTAATRGSGKSWDMKTVDVLVNTISWGTLMPIGVIIARYLKASNTGPAWFYLHVFCQCTAYAAGVFGRATDLILDYRSLGIQHTIHRYIGIALIVSATLQVLALFLRPKEEHKLRQIWNIYHHLIGYGTIILGVFNVFKGFDILKPQKKWKIIYILVISGLGIISVGLEFIMTYVKSKPKKAVVHGQAPPNPQEEEA* 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6568684 6573863 + Vvi5g606 Vvi5g606 786748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g606 966 Gene3D Severin 531 609 IPR029006 -
Vvi5g606 966 ProSiteProfiles DOMON domain profile. 627 741 IPR005018 -
Vvi5g606 966 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 296 IPR037364 -
Vvi5g606 966 Pfam Sec23/Sec24 helical domain 413 508 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vvi5g606 966 Pfam Protein of unknown function (DUF568) 668 766 IPR045265 -
Vvi5g606 966 SUPERFAMILY vWA-like 110 300 IPR036465 -
Vvi5g606 966 CDD DOMON_CIL1_like 626 768 IPR045265 -
Vvi5g606 966 Gene3D von Willebrand factor, type A domain 109 313 IPR036465 -
Vvi5g606 966 SMART 561_7 789 910 IPR006593 -
Vvi5g606 966 CDD Cyt_b561_FRRS1_like 758 939 - -
Vvi5g606 966 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 295 625 IPR037364 -
Vvi5g606 966 SUPERFAMILY Helical domain of Sec23/24 413 515 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vvi5g606 966 Pfam Sec23/Sec24 beta-sandwich domain 301 401 IPR012990 -
Vvi5g606 966 Pfam Eukaryotic cytochrome b561 797 910 IPR006593 -
Vvi5g606 966 Pfam Sec23/Sec24 trunk domain 110 290 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vvi5g606 966 SUPERFAMILY beta-sandwich domain of Sec23/24 2 412 - -
Vvi5g606 966 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 516 625 IPR036180 -
Vvi5g606 966 Coils Coil 963 966 - -
Vvi5g606 966 Gene3D - 1 66 - -
Vvi5g606 966 Gene3D - 768 954 - -
Vvi5g606 966 Gene3D Sec23/Sec24 helical domain 403 530 - -
Vvi5g606 966 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 296 - -
Vvi5g606 966 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 295 625 - -
Vvi5g606 966 ProSiteProfiles Cytochrome b561 domain profile. 750 946 IPR006593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g606 K14006 SEC23; protein transport protein SEC23 - cpap:110824845 795.038
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g606 . Blo12g00355 Bda03g00850 . Bpe04g00804 . Bma04g00750 . . Cmo17g00185 . . . . . . . . . . . . . . Cla06g00627 Cam06g0666 Cec06g0670 Cco06g0675 Clacu06g0653 Cmu06g0646 Cre06g1414 . . . . . Csa02g01104 Chy05g00363 . . . . . . . . . Sed04g1952 . . . Cma17g00189 . Car17g00167 Cpe12g00162 . Bhi12g02260 Tan06g2465 Cmetu05g0430 . Hepe03g0247 . Lcy13g0328 . . . . . . . Lsi09g01277 . . Cme05g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011145 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31