Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g607 ATGGGTCGAGAAGGATACGTTGTGCCGGCGGACCCGCAGGCAGCAATGAAGAAGAAAACGGCGTCGAGGAATTGGATAATGATGGATTGCAGTGGAGAGAAGACTGTTCTCGATTTGGACAAGTATGCGATTATGCATCGTGTTCAGATTCATGCCAGAGATCTTCGGATTCTTGATCCCCTCTTGTCCTACCCTTCTACTATATTGGGTCGAGAGAGGGCCATTGTTCTGAACTTAGAGCATATCAAGGCTATCATCACTGCTGAAGAGGTGTTGCTTCGAGATCCATCAGATGAAAATGTTATTCCTGTTGTTGAGGAGCTTCAAAGGCGACTGCCTCCTGTTAATGCCTTTCGCCAAGGTCAAGGAGATGGGAAAGATTATGGGCACCATGATGTTGAAGCAGGTGAAGAAGATGAGTCTCCCTTTGAATTCCGGGCTCTTGAGGTGGCTTTGGAAGCCATTTGTAGTTTTCTTGCTGCACGTACAACAGAACTGGAAACTGCTGCTTATCCAGCTTTGGATCAGCTTACGTCCAAGATTAGTAGCCTTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCAATGACGAGATTGACTGCTCGGGTTCAAAAGGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCTCAGGTGCCCCCAATTGGTTTGCTGCCTCCCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGGCTTACTTTATGCAAATTGATGGCACATTGAACAAATTAACTACGTTGCGAGAATATATTGATGATACGGAGGATTATATCAACATTCAGCTTGACAATCATCGAAATCAGTTGATTCAGTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATCATGGGTTCATGTTCAAATGGGTGGTTATCGTCACAGGTGTAAGTTGTGCTCTTCTTTTCGTAGTGATCATGTCATATGCTCGGCACAAGGGTCTTGTTGGATCCTGA 1170 44.36 MGREGYVVPADPQAAMKKKTASRNWIMMDCSGEKTVLDLDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPSDENVIPVVEELQRRLPPVNAFRQGQGDGKDYGHHDVEAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDQLTSKISSLNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGASSPVSGSGAPNWFAASPTIGSKISRVSRASVATVRGDENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNDDHGFMFKWVVIVTGVSCALLFVVIMSYARHKGLVGS* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6575874 6586571 + Vvi5g607 Vvi5g607 786749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g607 389 CDD Mrs2_Mfm1p-like 25 386 IPR039204 -
Vvi5g607 389 PANTHER MAGNESIUM TRANSPORTER MRS2-I 1 389 - -
Vvi5g607 389 Gene3D Magnesium transport protein CorA, transmembrane region 326 384 - -
Vvi5g607 389 Gene3D Magnesium transport protein CorA, transmembrane region 104 319 - -
Vvi5g607 389 Gene3D - 11 96 - -
Vvi5g607 389 Coils Coil 189 216 - -
Vvi5g607 389 Pfam CorA-like Mg2+ transporter protein 274 377 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi5g607 389 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 389 IPR039204 -
Vvi5g607 389 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 325 377 IPR045863 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g607 K16075 - vvi:100244262 733.791