Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g608 ATGTGCGCCGCAGAGGACTCGTTACACACGAGAAATACAGAGGCAAAAAACTCGGGGCTGCAAGTGCGTAGGTTAGATGGAGGAACCCCAGCAGCGCACGCTAACGCGAAGATCCCCCCCTGTTTTGGGGTTTGGATGATGTCGGGCCCGGTGGCCAAGGTTCCCCGGGAGAGGCTCGCCGCATGCATGACATGTCGTATCTGCAACAAGCTCTTCGATGACGCCACCACCATATCTGAATGTCTCCACACCTTTTGCAGGAAGTGCATATTTGACAAGATAACAGAAGATGAGTTGGATTATTGTCCTGTATGCAATACAAATCTAGGCTGTGCTCCACTTGAGAAACTAAGGCCAGACCACAATTTGCAAGATTTAACAGCCAAAATCTTCCCTTCAGAAAAATCAAAGGTCGTTGCAACTGAAGAAGTGGCCTCAGTTCCATTGCCAGCTAGAAGAAAGGAGAGATCTCTGTCCTCATTAGGGGTTAGCACACCTAGAGTGTCATCCCAGACTGTTATGACAGGAAAAAGAACAAAATCTGCTGCAAGAAGGCTTTCTGCTGCACGAGAATCCACTTTTCCTGTTGAGGAGCCCATTAAGAAAGAGGAGGATTATCCAGAGAACCCGAGCTCACCTGAAATTCTAAATAAGAGAGCACAAAATAAAAAGAATCTAAAGGAGAATTATTCTAGTGCTGAGTCATCTAAGCAACACATTAATAAAGGTAAGGAGGAAAATTCTGAAACACTGAAAGAAAAAGATGATATGTGGAAACCCTTAAATTGCCTGGTGGAAGCTTGTAGTGGAACAAAGTCTAATAAGTTAAATTTGCAAGGTTCTTTGGCCAAATCAACACCTTCACATGTTGATGACAAAGAAGCGCATGTCCCTAAAGCAAAACTTAAAGAACGTGGCAAGTTAAAATTTCAGGATGAAGAAAATGGCACAACTCATGTGCCATCTGGTTCAGTGAAACCGAGAATCCGTGGTGGTCGACAAAAAAAGGCAGCTACTCCAGAGGGGTTTAGTATTCCAGCACTAGCTGAGAATGATGGAAACAGCAAATGTAATATAAGGGCTTGTCCAGTTTGGTTCTCATTAGTTGCTTCTGATAACCAGGAAGGTGATGCACCCTTGCCACAGATACCTTCAAGCTACTTGAGGATGAGGGATGGTCATTTGCCTGTTTCATTTCTCCAGAAGTACCTTGTCCAAAAACTGCATCTTAATAGTGAATCTGAGGTGGAGATCACACTGCGGGGTCAGCCGGTTGTTCCCACATTGCAGCTGCAGAGCTTAGTAGATTTGTGGTTCCAAGCAGCAGCACCAACAACATCAGAAGCAACACAGCCACCCATTGGCAGCTCAGCCAAGGAGTTTGTGATGGTGCTGTCATATGGTCGCAAACCTAAGACCCCATAA 1425 45.19 MCAAEDSLHTRNTEAKNSGLQVRRLDGGTPAAHANAKIPPCFGVWMMSGPVAKVPRERLAACMTCRICNKLFDDATTISECLHTFCRKCIFDKITEDELDYCPVCNTNLGCAPLEKLRPDHNLQDLTAKIFPSEKSKVVATEEVASVPLPARRKERSLSSLGVSTPRVSSQTVMTGKRTKSAARRLSAARESTFPVEEPIKKEEDYPENPSSPEILNKRAQNKKNLKENYSSAESSKQHINKGKEENSETLKEKDDMWKPLNCLVEACSGTKSNKLNLQGSLAKSTPSHVDDKEAHVPKAKLKERGKLKFQDEENGTTHVPSGSVKPRIRGGRQKKAATPEGFSIPALAENDGNSKCNIRACPVWFSLVASDNQEGDAPLPQIPSSYLRMRDGHLPVSFLQKYLVQKLHLNSESEVEITLRGQPVVPTLQLQSLVDLWFQAAAPTTSEATQPPIGSSAKEFVMVLSYGRKPKTP* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6592178 6599657 + Vvi5g608 Vvi5g608 786750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g608 474 ProSiteProfiles Zinc finger RING-type profile. 65 106 IPR001841 -
Vvi5g608 474 SUPERFAMILY RING/U-box 61 131 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 311 338 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 158 178 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 195 209 - -
Vvi5g608 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 155 IPR013083 -
Vvi5g608 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 47 471 IPR044807 GO:0004842
Vvi5g608 474 ProSitePatterns Zinc finger RING-type signature. 81 90 IPR017907 -
Vvi5g608 474 MobiDBLite consensus disorder prediction 155 253 - -
Vvi5g608 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 47 471 - -
Vvi5g608 474 MobiDBLite consensus disorder prediction 238 253 - -
Vvi5g608 474 SMART ring_2 65 105 IPR001841 -
Vvi5g608 474 Pfam Zinc finger, C3HC4 type (RING finger) 65 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g608 K16277 DRIP; E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] - vvi:100245936 853.203
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g608 Vvi7g29 ECH
Vvi5g608 Vvi14g518 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011904 1 2 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 0 1 0 1 1 1 1 1 1 1 3 2 2 29