Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g609 ATGGATTTCCTCCAGAATATAGTGCATCTTGACCGCGAACTAACCCCGAATAAAAACACTGTACTTCATATACACATCAGGGGTGGCCAGGCGAAAAAGGAGCACGTGATAGCCATGGTCCGTCAGTGTCCGTCGCTCCTTCAAAAGACAAATAACAAAGATGAAACACCGCTGCACATGGCGGCCAGGGAAGGGTTGATTCAGATAGTGGGAGCTCTGGTTGATCAGGTAAAAGCTCCGCATGCTAATGATGCAGATCTGGAGAGCGGGAGAACACTATCTGTGAGGGAAATGATAGGGATGAGAAATAAGGAGGAAGACACGGCCTTGCACGAGGCAGTGCGATACCGTCGACTGGAGGTGGTGAACTCGTTGATCGATGCAGATCCTGAATTTGAATACTATCTGGCTACAGAAACAGATGACAATGGATGGACTCCCCTTCACTATGCTGCATACTTCGGTAAAGTCTCACAGGCGGAAGCGTTACTAAAAAGGGATGAGTCTGCGGCGTACATAGCAGACAATGATGGGAAGACACCTCTCCACATTGCAGCAAGTCGCAATCACGCACAAATAATGAAAAAACTTATATCATACTGCCCAGATTGCAGTGAAGTGGTTGACGAGAAAAGGCATAACGTGTTACACTTGGCCGTGCAGACGAGGGGTAGGGAAGCCATGGAACTTATACTAAAGAATTCTTGGGGCAGCAATCTTATTAATGACAAGGATGTGGATGGAAATACACCTCTTCATATGTTTGCTTGCTCCCTCAGTTCCGTGCCAACTTTAATGCTAAGTCACCCAAGAGTGGATAAAATGGCTGTGAACAACAAAGGCTTGACTGCTGCGGACATCCTGTCATCCAACACCCAAGCTCCACTGCTAAAGGGACTTGTCCAATTGGCGCTCAAAATCTGCAACCCTACTGCTCGGCCGAGTGTAAAAAAAGATCATGGTGGCAAAGACAGGGTGTCGGAAATTAGAAAGGCAATTAAAACTCAATTGGTAGTGGCAGCACTCATAGCAACCGTTGCCTTTGCTGCAGGTTTTAATTTGCCAGGTGGTTTCAAGGGGGAAAAGGGGTCTCACCGTGGCATGGCCGTTCTAGCTAACAAGGCAACTTTCATTGCTTTCTATATAACAGACGGCATGGCAATGCTCTTATCCACCGTGGCAATTGTCATCCACTTCTTCATGGCGCTACACGAAGACCAGGAACATCTTCATCTCATGTTTAAGTTGACTTCTTATTCCACTCTGTTTGGCATGGGAGCTATGCTAGCTGCATTCGCTATGGCTGCATGTGCTGTGCTACTCAGCAATTATTCTGGGGCTATTGTCACCATCACTGTTCTCTTTTTTTGCACCGCCCTGTTCCTTTGTTATCTTGCTTACCCCCTCCTGAAGAAATTGCCAGCCTTGGTGGTAACTAGCTCCCACCCCACTCCCAAGGTCTAA 1464 47.27 MDFLQNIVHLDRELTPNKNTVLHIHIRGGQAKKEHVIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKAPHANDADLESGRTLSVREMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYYLATETDDNGWTPLHYAAYFGKVSQAEALLKRDESAAYIADNDGKTPLHIAASRNHAQIMKKLISYCPDCSEVVDEKRHNVLHLAVQTRGREAMELILKNSWGSNLINDKDVDGNTPLHMFACSLSSVPTLMLSHPRVDKMAVNNKGLTAADILSSNTQAPLLKGLVQLALKICNPTARPSVKKDHGGKDRVSEIRKAIKTQLVVAALIATVAFAAGFNLPGGFKGEKGSHRGMAVLANKATFIAFYITDGMAMLLSTVAIVIHFFMALHEDQEHLHLMFKLTSYSTLFGMGAMLAAFAMAACAVLLSNYSGAIVTITVLFFCTALFLCYLAYPLLKKLPALVVTSSHPTPKV* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6611321 6615958 + Vvi5g609 Vvi5g609 786751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g609 487 ProSiteProfiles Ankyrin repeat region circular profile. 143 166 - -
Vvi5g609 487 Gene3D - 133 304 IPR036770 -
Vvi5g609 487 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 17 78 - -
Vvi5g609 487 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 94 133 - -
Vvi5g609 487 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 136 458 - -
Vvi5g609 487 ProSiteProfiles Ankyrin repeat region circular profile. 177 199 - -
Vvi5g609 487 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 78 - -
Vvi5g609 487 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 94 133 - -
Vvi5g609 487 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 136 458 - -
Vvi5g609 487 Pfam Ankyrin repeats (3 copies) 140 200 IPR002110 GO:0005515
Vvi5g609 487 Gene3D - 8 132 IPR036770 -
Vvi5g609 487 ProSiteProfiles Ankyrin repeat profile. 143 166 IPR002110 GO:0005515
Vvi5g609 487 SUPERFAMILY Ankyrin repeat 19 296 IPR036770 -
Vvi5g609 487 SMART ANK_2a 17 48 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 247 274 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 211 240 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 143 172 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vvi5g609 487 SMART ANK_2a 105 134 IPR002110 GO:0005515
Vvi5g609 487 Pfam Domain of unknown function 328 439 IPR026961 -
Vvi5g609 487 ProSiteProfiles Ankyrin repeat profile. 177 199 IPR002110 GO:0005515
Vvi5g609 487 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g609 - - - vvi:100240841 670.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000685 0 0 0 1 0 1 0 1 1 3 1 1 0 4 5 0 1 0 0 1 1 6 3 13 7 2 5 7 3 17 84