Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g611 ATGGCTCTCTTGCCCAGTCGTCAGTTCTACCCGACAACAACCTCCTTCCTCGACTCGTTCCACAGCACCCGCCTGCAATTCTTTAGGTACGGTTCTTCTAATCGTTTCAGAACGCACAGTTCTTATGTTGCCCGGAACACTATTGCCTCTAATTCAACTAACCCACAAAGGAAATCGAATATTGTTTTCACAAATACACCCGTCTCCCAATATGATTCTGGGGGTGTAAGTTCGTCTGGCGGCAATTGGATTGATAAATGGAATGGACCCCACCAGAAAAGCCACCCCAAAGAGTCTCGGCCAGTGATGAATTATCGAAATAGTGAGACTGTTTCGAGGAGTGATGGTGGCAGTGGTGGTGGGAGTACAATGGAGAAGATTGTGGAGAAATTGAAGAAATTTGGGTATATGGATGATGTTAAGGAGACGAAAGAGAATGTACAGGAGAGAATCATTGAGAAAGGATCTATTGAGGATATTTTTTATATTGAAGAGGGAATTTTACCCAACCCACAAGGTGGTTTTTCGCTGGACTCGCCATTGGGGGTTGAAAATAAGGGTGACGGCAATGGGGAGGTTCGGTTTCCATGGGAGAGACCAAAGGTGGAGGAAGGTTCTGTGAGGATAAAGAGTAGAACTTCATTGGCGGAATTAACACTTCCAGAGTCTGAGCTGAGGAGGTTGAGGAATTTGACCATGAGAACAAAGAATAAGACCAAGATTGGAGGTGGGGGTGTTACTCAAGCAGTGGTGGATATGATTCGTGAAAAGTGGAAAACATCAGAGATTGTGAAGCTGAAATGTGAGGGGGCTGCTGCACTTAACATGAGGAGGATACATGAGATATTGGAGAGAAAAACTGGTGGTTTGGTGATATGGAGATCTGGCACTTCTGTTTCTCTATATAGAGGTGTGAGCTATGAGGTTCCAGTCCAACTGAACAAAAGGGTGTATAAAAAAAATGAGACTTCCCACAGCTCCTTTTCCTCTATCACCCCTAATTCCTTTGCAATTTCTTCTAATAAAACTAGTGGGAATGCTCCAGCAGTGGGTTCAAATCAAAATGTGCATGCCTCTCAAGCAACCTTGAATATTACTGATGGGGAGAACAAAGACACAGAATCAGAAGTAAAGTATGAGGATGAAATAGACAAGCTTTTAGATGGTCTGGGGCCTAGGTACACAGATTGGCCAGGATGTGATCCCTTGCCGATAGATGCAGATCTGCTTCCAGGTAAAATTCATGGTTACCAACCTCCCTTCAGAATACTTCCTTATGGGGTGAGATCTTCTCTTGGACTAAAGGAAGCAACAGCTTTGCGAAGACTTGCCAGAGTTCTTCCTCCCCATTTTGCCTTAGGTAGAAGTAGGCAGCTTGAAGGTTTGGCCATGGCCATGATTAAGTTATGGGAAAGAAGTTCAATTGCGAAGGTTGCACTGAAACGTGGAGTTCAGCTAACTACTAGTGAGAGAATGGCTGAAGATATCAAGAAACTGACGGGGGGTGTGCTTCTCTCTAGAAACAAGGACTTCTTGGTCTTCTATAGGGGAAAGAATTTTTTATCATCAGATGTCACTGAAGCCCTACTGGAAAGGGAGAGATTGGCGAAGGCTCTGCAAGATGAAGAGGAGCAAGCACGGTTGAGAGCATCAACCTTGATTACACCAACTGTTGGAATAACTGAACAAGTTGGCAGTGCTGGTACACTTGGGGAAACTCTGGAGGCAGATGCTCGATGGGGAAAGAGGTTGGATGACCATGATAAACAAAAGATGTTAAAAAAAGCAGAAGTAGCAAGGCATGCTAACCTTGTTAGAAAGCTTGAGCGGAGGCTTGCTCTTGCTGAGAGAAAGCTAATGAAAGCAGAAAATGCCTTATCTAAGGTAGAGGAATTCTTGAAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGGTAGGCGTGGAGTTTTTTCTGGGACAGTGGAGAATATGCATTTGCATTGGAAGTACCGGGAGCTGGTTAAGATCATTGTGAAGGCCAAAACCTTTGACCAGGTTAAAAAAACTGCATTAGCCCTTGAATCTGAGAGTGGAGGGGTCTTGGTTTCAGTAGACAAAGTCTCCAAAGGCTTTGCCATAGTTGTATTCCGCGGAAAGGACTATCAGCGACCCTCCACATTGAGGCCAAAGAATCTTTTAACAAAGAGGAAGGCATTGGCACGTTCAATTGAGCTTCAAAGGCGAGAGGCTCTGTATAATCATATTTCAGCTCTGCAAAGAAATGTGGAGAAGCTAAGATCTGAAATTGAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGGAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGCGAACATGAAAGTGACAACTCAATTCACAATCACCACATAGAAACGAATTTCCCTTATGATATCCAAGGTGAGGAGTTTGAAACAGAAGCTGCTGTGCAAGATGAGGAGTCTGAAACAGAACCTGAGGCGCCTAAGCCCCATATGCATATGTCGTGGTCAGGTGACGGGGGCCTTAGAACTGATAGATTAGAGACAGAAGATGCTAGCTTACAATGA 2709 44.37 MALLPSRQFYPTTTSFLDSFHSTRLQFFRYGSSNRFRTHSSYVARNTIASNSTNPQRKSNIVFTNTPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRNSETVSRSDGGSGGGSTMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLGVENKGDGNGEVRFPWERPKVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVHASQATLNITDGENKDTESEVKYEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGKNFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADARWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANRPADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTFDQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSIELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGDEAYLETYADENDGEHESDNSIHNHHIETNFPYDIQGEEFETEAAVQDEESETEPEAPKPHMHMSWSGDGGLRTDRLETEDASLQ* 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6624064 6632689 + Vvi5g611 Vvi5g611 786753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g611 902 SUPERFAMILY YhbY-like 219 310 IPR035920 -
Vvi5g611 902 Coils Coil 598 632 - -
Vvi5g611 902 Gene3D - 431 526 IPR035920 -
Vvi5g611 902 Gene3D - 644 745 IPR035920 -
Vvi5g611 902 Gene3D - 218 320 IPR035920 -
Vvi5g611 902 MobiDBLite consensus disorder prediction 859 902 - -
Vvi5g611 902 ProSiteProfiles CRM domain profile. 430 527 IPR001890 GO:0003723
Vvi5g611 902 ProSiteProfiles CRM domain profile. 643 743 IPR001890 GO:0003723
Vvi5g611 902 Coils Coil 525 545 - -
Vvi5g611 902 Coils Coil 763 790 - -
Vvi5g611 902 MobiDBLite consensus disorder prediction 103 119 - -
Vvi5g611 902 ProSiteProfiles CRM domain profile. 218 314 IPR001890 GO:0003723
Vvi5g611 902 SMART CRS1_YhbY_2 220 303 IPR001890 GO:0003723
Vvi5g611 902 SMART CRS1_YhbY_2 645 732 IPR001890 GO:0003723
Vvi5g611 902 SMART CRS1_YhbY_2 432 516 IPR001890 GO:0003723
Vvi5g611 902 Pfam CRS1 / YhbY (CRM) domain 646 732 IPR001890 GO:0003723
Vvi5g611 902 Pfam CRS1 / YhbY (CRM) domain 220 303 IPR001890 GO:0003723
Vvi5g611 902 Pfam CRS1 / YhbY (CRM) domain 435 516 IPR001890 GO:0003723
Vvi5g611 902 PANTHER CRM-DOMAIN CONTAINING FACTOR CFM3A, CHLOROPLASTIC/MITOCHONDRIAL 1 875 IPR033262 GO:0000373
Vvi5g611 902 MobiDBLite consensus disorder prediction 352 368 - -
Vvi5g611 902 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 1 875 IPR045278 GO:0000375|GO:0003729
Vvi5g611 902 MobiDBLite consensus disorder prediction 352 378 - -
Vvi5g611 902 MobiDBLite consensus disorder prediction 88 123 - -
Vvi5g611 902 SUPERFAMILY YhbY-like 432 522 IPR035920 -
Vvi5g611 902 SUPERFAMILY YhbY-like 644 741 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g611 - - - vvi:100257970 1741.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30