Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g614 ATGGCTTCTGTGCAAGAGACTGTTCTGGTAGTTCCGGTCGGGAAGAAGAATGCTAAGAAGGCGTCTGCTGGAACGAAGAAGCCTAAGGCTTCTCCGGCACATCCGCCGTACAGTGAGATGATAAACGAGGCTATAATCGCGCTGAAGGAGAGGACTGGTTCGAGCCAGATCGCCATCGCGAAATTCATTGAAGAGAAGCAAAAATCGGGTCTTCCGGCCAATTTTAAGAAGCTTTTGCTCGTTCAGTTGAAGAAGCTTGTGGCTTCTGAAAAGCTTGTGAAGGTGAAGAATTCATATAAGCTCCCGTCTGCCGCCGCTAAGAAGTCGGTGGCGTCAGCGAAGTCGGAAGCAGCGAAAGCGCCGGCGAAGAAGAAGCCTGCTGCGAGGCCGAAGGCTGTGACTAAAACTAAGTCTGCTTCTGTAAAGGTGAAATCCACTCCCATTAAAGCGAAGGCTGTGGTTAAGCCAAAGCCCAAGGGGAGACCGTCAAAAGCGGCCAAGAAGACTTCGACGGCAAAGTCACCAGGAAAGAAGGCCCTCCAAAGAAGCCGAAGAGCATAA 561 51.16 MASVQETVLVVPVGKKNAKKASAGTKKPKASPAHPPYSEMINEAIIALKERTGSSQIAIAKFIEEKQKSGLPANFKKLLLVQLKKLVASEKLVKVKNSYKLPSAAAKKSVASAKSEAAKAPAKKKPAARPKAVTKTKSASVKVKSTPIKAKAVVKPKPKGRPSKAAKKTSTAKSPGKKALQRSRRA* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6654004 6654965 + Vvi5g614 Vvi5g614 786756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g614 186 MobiDBLite consensus disorder prediction 103 186 - -
Vvi5g614 186 PANTHER HISTONE H1 16 180 - -
Vvi5g614 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g614 186 SMART h15plus2 31 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g614 186 CDD H15 31 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g614 186 PANTHER HISTONE H1.1 16 180 - -
Vvi5g614 186 PRINTS Histone H5 signature 20 41 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g614 186 PRINTS Histone H5 signature 47 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g614 186 PRINTS Histone H5 signature 125 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g614 186 PRINTS Histone H5 signature 157 174 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi5g614 186 SUPERFAMILY Winged helix DNA-binding domain 31 109 IPR036390 -
Vvi5g614 186 Pfam linker histone H1 and H5 family 34 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi5g614 186 Gene3D - 29 114 IPR036388 -
Vvi5g614 186 MobiDBLite consensus disorder prediction 16 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g614 K11275 H1_5; histone H1/5 - vvi:100251147 253.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000875 2 2 4 2 3 2 4 2 2 3 2 2 4 3 3 4 2 7 4 2 2 2 3 3 3 2 2 4 4 4 88