Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g616 ATGAAACCAAAGCCTCATACCTTCCTTCAATATCCTCCCCTCAGAATCCTTTTCAAGATGCTGCAGCTAGATGTTCACGGCAAAGTTATTCTCACACTCCTTTTGGCTTCATCTCTGGGATTCATGGTCAAGGCAGCCATCCATTACCGCCGGCGGAAGATTAACCCGGAGAACGATCTGAGTTTTGCTCCACGCCTGGTGAGAACCGGGTCCGGCCGTGTCGGAAAGATTGAAAGGTTCGCCCATTACGTAGCTAGGCAAATGGGATTTCCAGACCCAGATGAGTGTCCCCGGTTCTGCAAATTAGCTTATGATTATCTCAAGAAATCAAAAGGGTGCGATCAAAACATCTATGAGTACTTTTCAAGCCTAACAGACGCAAAGTCTCTCTACATGAAACTGGTAGAGGAGTTTGAGAGGTGTATCCTTAGTTATTTTGCATTTCACTGGAGCCAAGCTTCTTTTATGATCAATCAGGTGCTGAGTGTAGAGTCTGATGAGCAGAAGACGAAGATCAAGGACCTTGTGATGGCAGCTACAAGGAAACAGAGGTTTGAGAAGGTGACAAGGGACTTGAAAGTGACGAGGGTGTTCCATACACTGTTGGAGGAGATGAAAGCCATAGGGGTGGCGCCATCTAGTGGTTGCACAGAGGTGATGATGCCGGTGGCCCTCAGTGAGAGGAGCCCTGTGCTCCTCCTCATGGGTGGTGGGGCGGGTGCCGGCAAGAGCACCGTCCTCAAGGAGATTATGAAAGACGCATTCTGGTCAGGAGCAGAAGCAAACTGTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCGTTTACAGAGCCCTTAGCTCTCATCACCATGACATGCTTCAAACTGCTGAGCTGGTGCACCAATCGTCTACTAATGCAGCATCATCACTCCTTGTGGCTGCACTGAATGAAGGCCGTGATGTAGTCATGGATGGCACCTTATCATGGGAGCCCTTTGTCCAGCAAACAATTGCCATGGCTAGGAATGTTCATAAACGCCGTTATCGAATGGGGGTTGGCTACGACGTGGCGGAGGATGGAACTGTCACTGAAAATTATTGGGAAGAGGTACCACTTGAAGAAGAAGAGGAGCAACAAAAAGAAAATGGACAAGTAGCAAGGAAACCATACAGAATAGAGTTGGTTGGAGTGGTCTGTGATCCTTTTCTAGCAGTTGTCAGAGGCATCAGGAGAGCCATAGAGACAAGAAGAGCAGTGAGGGTGAATGAGCAAGTGAAATCCCACAAGAGATTTGCAAGCAACTTTCAGAGTTACTGCCAACTTGTCGATAATGTCAGGCTATATTGCTCCAATGCCATGGGCAGGCCACCCGCGTTGATAGCATGGAAAGAGGGAGGCAACAAGCTACTGGTTGATCCTGAAGCAATCAAATGTTTGACAGTAATCAGCACTTCAAATGAAGATGCAGAGAACATCTATGAGCTTTACAAGCAGCCAAACCTCGTACATGAAGAGGGTTCGGTTTGGAAAGACATTGTTCTGTCACCTTCCAGAGTGAGCCTTCAACTGGAGCTCAGAACATCTATTCAGAAAATCGAAAACTTGAAAGGCTCCAACTTGAACCTGACAGAGCAGGTGAGGTTGTTCAGAAAAACCGTGGATACAATCCTTCCTCAGCACCTGAAAACCCCAGAAGCAATCTCACGTCACTTGTCAAGCTCTATTTTCTTGGTTCTCATTGGCAGTAATGACTATGCAATGAATTATCTTCTGCCTCAATTCTCCAACAGCAGTCGCTTATACAATCCTGAGCAATTTGCTGAACTCCTCCTGAACGAATTGGGAAATCATTTGCGGGAGATGTACCGTCTGGGTGGCAGGAATTTTGTAGTGTTTGAGATCGGTCCCATTGGTTGTCTACCAACTGCTGCACTAGAAAATGCTGGAACAAAGACCCAATGCGTAGAGAAACCAAATGATTTAGTATCCATCTTCAATGCAAAGCTTGCTTCTAACATCAATCAGCTCACTTCCTCACTCCAACACTCCACCTTTGTTCTTGTGAAAACCTTCAACTTAGTGCATGGCCTTGTGGAAAATCCTTCTCGCAATGGGTTCAATGATTCAAGAAATCCATGTTGCGTTATAAGCGATAAAACTGGAACTTGCATTCCAAATAAAACCCCGTGCCAGGACAGAAACGGCCATGTATTTTGGGATGGAGCTCACCACACCGATGCAGTAAACAGGTTTGCAGCAAGGGAAATCTTCAATGGGACAAGCTTTTGCACTCCCATCAACGTCCAAAACCTTACAACATCCTGCTCATATGGATCAGCAGGGAAGACACGTAGTTCCTCGAGCAAAGGACAGCTAGATCCAACAGCTTCCAGCCCTTTGTCTTCTACTCATCAAAAGAGACATCACTGCTCAGATTCACAAAATTCGGCACTTCTACCTCATGCCTTCCTTCAATATCCTCCCCTTAGAATCCTTTTCAAGATGCAGCAGCTAGGTAATCCGACCTCTCCAGCTCTTTCTCTCTCTTTCTCTTTTAGTCCATCTGATCTTAAACCACTGATAGTGACCTTAACTTCTTTACTTGTTGCAGATGTTCACGGCAAAGTTATTCTCACACTCCTTTTGGCTTCATCTCTGGGATTGACGGTCAAGGCAGCCATCCATTACCGCCGGCGGAAGATTAACCCGGAGAACGATCTGAGTTTTGCTCCACGCCTGGTGAGAACCGGGTCCGGCCGTGTCGGAAAGATTGAAAGGTTCGCCCATTACGTAGCTAGGCAAATGGGATTTCCAGACCCAGATGAGTGTCCCCGGTTCTGCAAATTAGCTTATGACTATCTCAAGAAATCAAAAGGGTGCAATCAAAACATCTATGAGTACTTTTCAAGCCTACCAGACGCAAAGTCTCTCTACATAAAACTGGTAGAGGAGTTTGAGAGGTGTTTCCTTAGTTATTTTGCATTTCACTGGACCCAAGCTTCTTTTATGATCAATCAGGTGCTGAGTGTAGAGTCTGATGAGCAGAAGACGAAGCTCAAGGACTTTGTGATGGCAGCTACAAGGAAACAGAGGTTTGAGAAGGTGACGAAGGACTTGAAAGTGAAGAGGGTGTTCCATACACTGTTGGAGGAGATGAAAGCCATAGGGGTGGCGCGATCTAGTGGTTGCACAGAGGTGATGATGCCGGTGGCCCTCAGTGAGAGGAGCCCAGTGCTCCTCCTCATGGGTGGTGGGATGGGTGCCGGCAAGAGCACCGTCCTCAAGGAGATTATGAAAGACGCATTCTGGTCAGGAGCAGAAGCAAACTGTGTGGTAGTGGAGGCAGATGCTTTCAAAGAGACCGATGTCATTTACAGAGCCCTTAGCTCTCATCGCCATGACATGCTTCAAACTGCTGAGCTGGTGCACCAATCGTCTACTAATGCAGCATCATCACTCCTTGTGGCTGCACTGAATGAAGGCCGTGATGTAGTCATGGATGGCACCTTATCATGGGAGCCCTTTGTCCAGCAAACAATTGCCATGGCTAGGAATGTTCATAAACGCCGTTATCGAATGGGGGTTGGCTACGACGTGGCGGAGGATGGAACTGTCACTGAAAATTATTGGGAAGAGGTACCACTTGAAGAAGAAGAGGAGCAACAAAAAGAAAATGGACAAGTAGCAAGGAAACCATACAGAATAGAGTTGGTTGGAGTGGTCTGTGATCCTTTTCTAGCAGTTGTCAGAGGCATCAGGAGAGCCATAGAGACAAGAAGAGCAGTGAGGGTGAATGAGCAAGTGAAATCCCACAAGAGATTTGCAAGCAACTTTCAGAGTTACTGCCAACTTGTCGATAATGTCAGGCTATATTGCTCCAATGCCATGGGCAGGCCACCCGCGTTGATAGCATGGAAAGAGGGAGGCAACAAGCTACTGGTTGATCCTGAAGCAATCAAATGTTTGACAGTAATCAGCACTTCAAATGAAGATGCAGAGAACATCTATGAGCTTTACAAGCAGCCAAACCTCGTACATGAAGAGGGTTCGGTTTGGAAAGACATTGTTCTGTCACCTTCCAGAGTGAGCCTTCAACTGGAGCTCAGAACATCTATTCAGAAAATCGAAAACTTGAAAGTAAATGGTAGTACCAAGGGAAGTAATACGACCATGGCCTAG 4167 46.75 MKPKPHTFLQYPPLRILFKMLQLDVHGKVILTLLLASSLGFMVKAAIHYRRRKINPENDLSFAPRLVRTGSGRVGKIERFAHYVARQMGFPDPDECPRFCKLAYDYLKKSKGCDQNIYEYFSSLTDAKSLYMKLVEEFERCILSYFAFHWSQASFMINQVLSVESDEQKTKIKDLVMAATRKQRFEKVTRDLKVTRVFHTLLEEMKAIGVAPSSGCTEVMMPVALSERSPVLLLMGGGAGAGKSTVLKEIMKDAFWSGAEANCVVVEADAFKETDVVYRALSSHHHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDGTLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQVARKPYRIELVGVVCDPFLAVVRGIRRAIETRRAVRVNEQVKSHKRFASNFQSYCQLVDNVRLYCSNAMGRPPALIAWKEGGNKLLVDPEAIKCLTVISTSNEDAENIYELYKQPNLVHEEGSVWKDIVLSPSRVSLQLELRTSIQKIENLKGSNLNLTEQVRLFRKTVDTILPQHLKTPEAISRHLSSSIFLVLIGSNDYAMNYLLPQFSNSSRLYNPEQFAELLLNELGNHLREMYRLGGRNFVVFEIGPIGCLPTAALENAGTKTQCVEKPNDLVSIFNAKLASNINQLTSSLQHSTFVLVKTFNLVHGLVENPSRNGFNDSRNPCCVISDKTGTCIPNKTPCQDRNGHVFWDGAHHTDAVNRFAAREIFNGTSFCTPINVQNLTTSCSYGSAGKTRSSSSKGQLDPTASSPLSSTHQKRHHCSDSQNSALLPHAFLQYPPLRILFKMQQLGNPTSPALSLSFSFSPSDLKPLIVTLTSLLVADVHGKVILTLLLASSLGLTVKAAIHYRRRKINPENDLSFAPRLVRTGSGRVGKIERFAHYVARQMGFPDPDECPRFCKLAYDYLKKSKGCNQNIYEYFSSLPDAKSLYIKLVEEFERCFLSYFAFHWTQASFMINQVLSVESDEQKTKLKDFVMAATRKQRFEKVTKDLKVKRVFHTLLEEMKAIGVARSSGCTEVMMPVALSERSPVLLLMGGGMGAGKSTVLKEIMKDAFWSGAEANCVVVEADAFKETDVIYRALSSHRHDMLQTAELVHQSSTNAASSLLVAALNEGRDVVMDGTLSWEPFVQQTIAMARNVHKRRYRMGVGYDVAEDGTVTENYWEEVPLEEEEEQQKENGQVARKPYRIELVGVVCDPFLAVVRGIRRAIETRRAVRVNEQVKSHKRFASNFQSYCQLVDNVRLYCSNAMGRPPALIAWKEGGNKLLVDPEAIKCLTVISTSNEDAENIYELYKQPNLVHEEGSVWKDIVLSPSRVSLQLELRTSIQKIENLKVNGSTKGSNTTMA* 1389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6661341 6682869 - Vvi5g616 Vvi5g616 786758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g616 1388 MobiDBLite consensus disorder prediction 778 809 - -
Vvi5g616 1388 Gene3D SGNH hydrolase 522 757 IPR036514 -
Vvi5g616 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 357 IPR027417 -
Vvi5g616 1388 PANTHER UNCHARACTERIZED 867 1375 IPR044802 -
Vvi5g616 1388 PANTHER UNCHARACTERIZED 24 533 IPR044802 -
Vvi5g616 1388 MobiDBLite consensus disorder prediction 778 800 - -
Vvi5g616 1388 Pfam Zeta toxin 226 336 IPR010488 GO:0005524|GO:0016301
Vvi5g616 1388 Pfam Zeta toxin 1069 1179 IPR010488 GO:0005524|GO:0016301
Vvi5g616 1388 Pfam GDSL-like Lipase/Acylhydrolase 560 752 IPR001087 GO:0016788
Vvi5g616 1388 Gene3D - 1060 1294 IPR027417 -
Vvi5g616 1388 Gene3D - 218 452 IPR027417 -
Vvi5g616 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1068 1200 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g616 - - - vvi:100249459 1015.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g616 . . . . . . . . . . . Cma14g01779 Car06g01161 Car14g01601 . . Cpe03g01489 . . . . . . . . . . . . . . . . . Cone4ag0298 . Csa02g01087 Chy05g00349 Cme06g00541 . Blo07g00245 . . . Bpe13g00575 . . . . . . Cma17g00177 . Car17g00159 Cpe12g00153 . . . . . . . . Cla05g00484 Cam05g0527 Cec05g0540 Cco05g0540 Clacu05g0526 Cmu05g0498 Cre05g0565 . Csa03g01259 Chy06g00514 Cme05g00535
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100