Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g618 ATGGGAATTTTAAAACGTGGGAGAAAAATTATGGGTTTAACATGCAAATTTCTATGGCTGAAAAAAAATCCTGAGTTGATTGTAGTGTGCTGGGTTCTAGCTAGGTGGTATCAGCAGAACGAAAAAAAAAGAGACAAGGTTGGCATGTTTAGGATTGTCCTGGACTCGGATAATATTTCAGGGCTGCCTATTGAAGAGATTATCCAGCCAAAGATGAATGCAGACAATGACAACAAGGAACAGTTGTTTGATTTAGGACTTGCTCTGGGTTATTCTAGTCAGTGCATTGGGAAAGCATTGAACAATGATTCAGGTGCAGGTGCAAATGCAGGTTCAAGGGTAGACATGACACTTGTAGCCACTGATCCCCTGTCTGAACTAGTTTGGTCTCCTCATAAAGGTTTGAGTCTCAAGTGTGCTGAAAACAGTACGGATGAGAAGAGGCCCTCTCTTTTATGGGGTGTAGGACCGAGCAATATGATTCATTCACCACCACAAGGCATTTCAGCCAGGAAAACTATTTCTGATGAGCCTATGGGTGAGGGGAATTTGGTTACCTCACAAGCAACACTTCATGTGAAGAATGAAATGGGTGAAACAGATATTTTGACCTGTTCTCCTAGGAGCAATGCTGGCATCATGACAGTACATGGATCAAGTCATGAGCCCAATGCAGGTACTAGAGATAACAATGACAAAATGATGGTGGCAGTGAAAGTATCTGCCCTAGATGTTAATCAAGAGCGGGATCAAGGAGACAATGAAGAAAAAGGCATATATGTTCCTGTACATATTCCAATGGATGTTACTTCTGAGGCCAGAGGGAAAAAGGTTTCAGGTTTCTCAGGTATGGAACTTGGATGTATGGCGGACTCTCTATCATTCAAAATGAATGAAACTGAACCTGATATGGCACAAATTGAACCCTTGCCTATGCAGCTCAAGAAAATGATAAGCTCTAATCCCAATGGTGGAATTGGAGATGATGGTAGCGGTAATCAAACATTGGGAATGGAAGTTGTTTTGACTACTGAAGTTCCTCTGGTGAAACGGTGTAAAACTCCTGATACTCCAGTGCTGAATTCAACATCTCCATTCAGAAGAGATGAGGGTTTAGCTTTAGCTATTGAAGAAGAGAGCAATAATGAAATGAAGACACCTGGTTCTACTAGTACCCCTCTTGAGAAACTAGAGTCAGCTGCTGAAAATGATTTACGAACTCAGACTGGTGAAAATGCTTGTGGTGCAGTGAGTAAGATAATGGCATCATCATCTGACCATGATGTTAAAATCATCTCTCAGCAAGATGAAGGGTTGCGTCCTAAGGCCAAGGCTCTTCCTGTTAATAATTCTCCAAATAAGAGTGGAATGTATAGGCATCGAACGAAAGGAAAAGGAAAAGCTTTATCTGATGGTGATCGTAGTGGAAGAAAGTCAAACAAAGAGGATGACAGTGATGAGAGTGTTGAAAGTTGTAATAGTGCTGCTTTATTTTCAACAGGAAAAAAACGGTGGGGCTATGAACAACAGTTGATAACTGGCAGTAAAAGAATCCGAAAACAAATTAATGGAAGTCCTGGCTCCACATCCTTTGTCAGACAAGACAGCTCTTTTATGAGCTGGATATCAAACATGATGAAAGGGCTATCCAAATCTAATCAAGACGAGACACCTTCTCTCGCTCTAACCCTTGCACGTCCTAATCATGATAATTATGATCAGAAGCTTGTAACATGTAACAAAAACCAAGACCCTGGGTGCAGAAATATAGGTTTCCAATCTATTTTTCAGTCCCTATATTGTCCAACCACAAAGGTACAGGAATCAAGAACCTTGAATGCTGATAACCAAACAGGGGAAGGATCCAAAGAATTTTGTCTGGCTAACAAGCTATGTGATTTTAACCAATCCACATTTGGAAACAGAGCAGGCCCTTCGACCCAGCCTAAAGTTCTGTCAGCCAAATTTGCTGTCAGTCAAGAGAACTACAAGACCAGCTCTACAATTCATAATTTTGGTTATAAAAGTGATCTTCTGGGAAGCCTGTGGGTAACTCGGTTTTCTCCTAAAACTTCAAGCCCCACTTGTAAAGTAGACCACTGCAACCAGAATACAGGGACCAGGGAGTATTGCACTGAAGAACCATTGACTATTGTTGGTGCAGAATTACAGAATTGTTCTGGAGGTACTGAGGTGTCCTTTGGGTTCAAAAAAAATAATGCTCATAACAATCAGAATTCCATATATAAACTGAACCCTATTTCACCTTCGCAAAGATTCAAAAGTTCAGAGGCAATGGCTTCCCTCTTTGCTAGGAGATTGGATGCCCTCAAAAACATTATAACATTGAATCAAACAGATACCGAAGCTCGGGCAACTCCAACCTGTTTCTTTTGTGGCATAAGAGCTCAATCATTGGGCTGTTGCATGTCCCAGTGTCTTGAAAAGGCAAAATCAATCAGAATGTGGTGCTTCTTTGAAAGTCAGATAATTCCTTTGTGCAATTTTGTCAATCCACAGATTTCAGATGTACCAAAAGGAATCTTTGATGCAATAAAGAGGCTTCGTTTGTCTCGCGGGGATATACTCAAATGGATGAATTCCGTTTTCCCATTCTCACATCTCAATGGTTTTTTCCTGCGCTTGCGGCTTGGGAAGTGGGAAGAAGGGCTAGGGGGAACAGGCTATTATGTGGCTTGTATATCTGGGGCACAAAAAGAAAGACCTTCACAAAGTTCCAAAAATCCAATCGCTGTGAACATCGGGGGTGTCAAGTGCTTGGTCCAAAGTCAATACATCTCTAATCATGATTTCCTTGAGGATGAGCTTATGGCGTGGTGGGGCGCAACCACCAGAGCTGGTGGCAAGATTCCATCTGAAGAAGATCTGAAAGTGAAACTTGAAGAGAGAAAGAAGTTTGGCTTTTAG 2928 41.53 MGILKRGRKIMGLTCKFLWLKKNPELIVVCWVLARWYQQNEKKRDKVGMFRIVLDSDNISGLPIEEIIQPKMNADNDNKEQLFDLGLALGYSSQCIGKALNNDSGAGANAGSRVDMTLVATDPLSELVWSPHKGLSLKCAENSTDEKRPSLLWGVGPSNMIHSPPQGISARKTISDEPMGEGNLVTSQATLHVKNEMGETDILTCSPRSNAGIMTVHGSSHEPNAGTRDNNDKMMVAVKVSALDVNQERDQGDNEEKGIYVPVHIPMDVTSEARGKKVSGFSGMELGCMADSLSFKMNETEPDMAQIEPLPMQLKKMISSNPNGGIGDDGSGNQTLGMEVVLTTEVPLVKRCKTPDTPVLNSTSPFRRDEGLALAIEEESNNEMKTPGSTSTPLEKLESAAENDLRTQTGENACGAVSKIMASSSDHDVKIISQQDEGLRPKAKALPVNNSPNKSGMYRHRTKGKGKALSDGDRSGRKSNKEDDSDESVESCNSAALFSTGKKRWGYEQQLITGSKRIRKQINGSPGSTSFVRQDSSFMSWISNMMKGLSKSNQDETPSLALTLARPNHDNYDQKLVTCNKNQDPGCRNIGFQSIFQSLYCPTTKVQESRTLNADNQTGEGSKEFCLANKLCDFNQSTFGNRAGPSTQPKVLSAKFAVSQENYKTSSTIHNFGYKSDLLGSLWVTRFSPKTSSPTCKVDHCNQNTGTREYCTEEPLTIVGAELQNCSGGTEVSFGFKKNNAHNNQNSIYKLNPISPSQRFKSSEAMASLFARRLDALKNIITLNQTDTEARATPTCFFCGIRAQSLGCCMSQCLEKAKSIRMWCFFESQIIPLCNFVNPQISDVPKGIFDAIKRLRLSRGDILKWMNSVFPFSHLNGFFLRLRLGKWEEGLGGTGYYVACISGAQKERPSQSSKNPIAVNIGGVKCLVQSQYISNHDFLEDELMAWWGATTRAGGKIPSEEDLKVKLEERKKFGF* 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6700722 6711313 - Vvi5g618 Vvi5g618 786760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g618 975 MobiDBLite consensus disorder prediction 435 491 - -
Vvi5g618 975 Pfam Plus-3 domain 852 948 IPR004343 GO:0003677
Vvi5g618 975 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 826 975 - -
Vvi5g618 975 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 126 809 - -
Vvi5g618 975 ProSiteProfiles Plus3 domain profile. 846 975 IPR004343 GO:0003677
Vvi5g618 975 MobiDBLite consensus disorder prediction 382 410 - -
Vvi5g618 975 SMART rtf1 849 952 IPR004343 GO:0003677
Vvi5g618 975 SUPERFAMILY Plus3-like 849 973 IPR036128 GO:0003677
Vvi5g618 975 Gene3D - 847 971 IPR036128 GO:0003677
Vvi5g618 975 PANTHER UNCHARACTERIZED 826 975 - -
Vvi5g618 975 PANTHER UNCHARACTERIZED 126 809 - -
Vvi5g618 975 MobiDBLite consensus disorder prediction 377 410 - -
Vvi5g618 975 MobiDBLite consensus disorder prediction 464 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g618 - - - vvi:100244302 1482.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40