Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g62 | ATGGACACGCCTCCAGCTGAAGAGCTGCTGAGGAAGATCCAAGAGCTGGAAGCGGGTCATGCGCATCTCAAGGAAGAGATGTCGAAGCTGATGGTTTCTGGACCCAAATCGGACCATGGGCATCAGAGGTCGCACTCGACATCGCCACAGAGGTCGAGGTTTTCGTCGCCGGCGACATCCACTGCCGGCGGTGGTGGTGGCCCGGCGGCTTACAAATTTAATGATAAGCAGTATTCGAATATTTTGCAGAGCATGGGGCAGTCAATTCATATATTTGATCTCAATGGTCGCGTAATCTATTGGAATAGAACTGCTGAAAAACTTTATGGTTATTCAGCTGAAGAAGCCCTCGGTCAGCAGGCCATTGAGCTCCTATCGGATGTCCAGGACTACGCTATTGCTAATAATATAGTGGATCGAGTATCAAGGGGGGAGAGCTGGACTGGGCAGTTCCCTGTGAAGAATAAGATGGGGGAGAGGTTTCTAGCCGTTGCTACCAACACTCCATTCTATGATGATGATGGTACATTAATTGGGATTATTTGCGTATCTAGTGATTCGCAGCCCTTTCAAGAAATAAGAGTTGCAATGTCCAATGAGAGGCAATCAGAAGCTAATGCGAGCTATAATCGTTCCCGAAGCAGTAGTGCTTCGGCAAAGCTTGGTCTTGATCCTCAGCAGCCTATTCAAGCTGCAATTGCCTCCAAAATATCAAATTTGGCTTCCAAGGTGAGCAACAAAGTTCGGAAAATTAAGGCTGGGGAGAACAATGTGGTTCGCGAGGGTGGGAGTGGAGATAGTCATCATTCTGATCATGGTTTCTCAGATGCAGCTTTCTCTGACCATAGGGAGGATGCAACTTCAAGTGGAGCTAGCACCCCCAGAGGAGATGTGGCACCATCTCCTTTTGGCATATTTTCTCAGGCAACTGCTGATGAGAAGTCCCCAGGAAAGAACTTAAGAGATTCTGGTGATGAGAATGAAGGGAAACCTGGGATCCACAGGGTTATTACCTCCAAGGCAGAGGCATGGATTGGCAAGAAAGTTATGTCATGGCCATGGAAAGGGAATGAACGGGAAGGGTCGGAGGTAAAGACAAACCGGTTTGGTTGGCCCTGGTTGCAGAATGATCATGAGAATGACATGGTCCAACCAAAGAATCCCAATTTTGGTGCAAAAACCGAAAACCTGGTGAGTGAAAGTAATCGGCACGGGAATAATGATGCTTCAGGGTCCTGGTCTTCATTTAATGTTAACAGCACGAGCAGTGTAAGTAGCTGTGGCAGTACCAGCAGTAGTGCTGTTAATAAAGTGGACATGGAAACTGACTGCTTGGATTATGAAATTTTGTGGGAAGACTTGACTATTGGAGAACAGATTGGGCAAGGATCTTGTGGAACCGTATATCATGGTCTTTGGTATGGATCAGATGTTGCTATCAAGGTGTTCTCCAAGCAGGAATATTCAGATGACGTGATACTTTCATTCAGACAAGAGGTATCTCTCATGAAAAGGCTTAGACATCCAAATGTTCTGCTCTTCATGGGTGCAGTAACTTCACCTCAGCGTCTATGCATTGTCACTGAGTTCCTTCCACGTGGAAGTTTATTTCGGTTACTCCAAAGGAACACATCCAGACTAGATTGGAGACGACGTGTACACATGGCTTTGGATATAGCACAAGGCATGAACTATCTTCATCATTTCAACCCACCTATCATCCATCGTGATTTGAAGTCTTCAAATCTTCTAGTTGATAGAAACTGGACTGTGAAGGTTGGTGATTTTGGTCTATCACGTCTCAAACATGAAACATATCTCACAACAAAGACTGGGAAAGGAACGCCTCAATGGATGGCTCCAGAGGTTCTCCGTAATGAACCCTCAGATGAGAAGTCTGATGTATATAGTTATGGAGTAATATTATGGGAGCTTGCCACTGAGAAGATCCCTTGGGATAATCTCAACACAATGCAGGTGATTGGAGCTGTTGGTTTTATGAACCAACGGCTTGACATACCAAAAGAAGTGGATTTACGATGGGCTTCTATAATTGAGAGTTGCTGGCACAGTGATCCCCGGAGTAGGCCAACATTCCAGGAATTGCTGGGAAAGTTCAAAGATATACTGAGACAGCAAACTATGCAATTTCAGGCAGCCCGTGCTGCAGCTGGAGATAACACCCAAAAGGAGTTGTAG | 2199 | 45.79 | MDTPPAEELLRKIQELEAGHAHLKEEMSKLMVSGPKSDHGHQRSHSTSPQRSRFSSPATSTAGGGGGPAAYKFNDKQYSNILQSMGQSIHIFDLNGRVIYWNRTAEKLYGYSAEEALGQQAIELLSDVQDYAIANNIVDRVSRGESWTGQFPVKNKMGERFLAVATNTPFYDDDGTLIGIICVSSDSQPFQEIRVAMSNERQSEANASYNRSRSSSASAKLGLDPQQPIQAAIASKISNLASKVSNKVRKIKAGENNVVREGGSGDSHHSDHGFSDAAFSDHREDATSSGASTPRGDVAPSPFGIFSQATADEKSPGKNLRDSGDENEGKPGIHRVITSKAEAWIGKKVMSWPWKGNEREGSEVKTNRFGWPWLQNDHENDMVQPKNPNFGAKTENLVSESNRHGNNDASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDMETDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWYGSDVAIKVFSKQEYSDDVILSFRQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSRLDWRRRVHMALDIAQGMNYLHHFNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSYGVILWELATEKIPWDNLNTMQVIGAVGFMNQRLDIPKEVDLRWASIIESCWHSDPRSRPTFQELLGKFKDILRQQTMQFQAARAAAGDNTQKEL* | 733 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 694777 | 701765 | - | Vvi5g62 | Vvi5g62 | 786204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 27 | 45 | - | - | |
Vvi5g62 | 732 | SMART | serkin_6 | 454 | 715 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g62 | 732 | CDD | PAS | 85 | 186 | IPR000014 | - | |
Vvi5g62 | 732 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 573 | 585 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 201 | 223 | - | - | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 27 | 68 | - | - | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Vvi5g62 | 732 | ProSiteProfiles | PAS repeat profile. | 74 | 145 | IPR000014 | - | |
Vvi5g62 | 732 | Gene3D | Phosphorylase Kinase; domain 1 | 447 | 531 | - | - | |
Vvi5g62 | 732 | TIGRFAM | sensory_box: PAS domain S-box protein | 75 | 186 | IPR000014 | - | |
Vvi5g62 | 732 | PRINTS | Tyrosine kinase catalytic domain signature | 528 | 541 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | PRINTS | Tyrosine kinase catalytic domain signature | 567 | 585 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | PRINTS | Tyrosine kinase catalytic domain signature | 614 | 624 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | PRINTS | Tyrosine kinase catalytic domain signature | 633 | 655 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | PRINTS | Tyrosine kinase catalytic domain signature | 677 | 699 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | Pfam | PAS fold | 77 | 184 | IPR013767 | GO:0006355 | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 252 | 335 | - | - | |
Vvi5g62 | 732 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED | 64 | 731 | - | - | |
Vvi5g62 | 732 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 74 | 183 | IPR035965 | - | |
Vvi5g62 | 732 | Gene3D | Transferase(Phosphotransferase) domain 1 | 532 | 731 | - | - | |
Vvi5g62 | 732 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 64 | 731 | - | - | |
Vvi5g62 | 732 | Pfam | Protein tyrosine and serine/threonine kinase | 454 | 704 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi5g62 | 732 | ProSiteProfiles | Protein kinase domain profile. | 454 | 710 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi5g62 | 732 | Coils | Coil | 6 | 26 | - | - | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 252 | 283 | - | - | |
Vvi5g62 | 732 | Gene3D | PAS domain | 86 | 190 | - | - | |
Vvi5g62 | 732 | SMART | pas_2 | 76 | 142 | IPR000014 | - | |
Vvi5g62 | 732 | MobiDBLite | consensus disorder prediction | 315 | 335 | - | - | |
Vvi5g62 | 732 | CDD | STKc_MAP3K-like | 460 | 703 | - | - | |
Vvi5g62 | 732 | SUPERFAMILY | Protein kinase-like (PK-like) | 439 | 703 | IPR011009 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76672 | PF07714 | PK_Tyr_Ser-Thr | 4.10E-68 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g62 | - | - | vvi:100256793 | 1389.02 |