Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g62 ATGGACACGCCTCCAGCTGAAGAGCTGCTGAGGAAGATCCAAGAGCTGGAAGCGGGTCATGCGCATCTCAAGGAAGAGATGTCGAAGCTGATGGTTTCTGGACCCAAATCGGACCATGGGCATCAGAGGTCGCACTCGACATCGCCACAGAGGTCGAGGTTTTCGTCGCCGGCGACATCCACTGCCGGCGGTGGTGGTGGCCCGGCGGCTTACAAATTTAATGATAAGCAGTATTCGAATATTTTGCAGAGCATGGGGCAGTCAATTCATATATTTGATCTCAATGGTCGCGTAATCTATTGGAATAGAACTGCTGAAAAACTTTATGGTTATTCAGCTGAAGAAGCCCTCGGTCAGCAGGCCATTGAGCTCCTATCGGATGTCCAGGACTACGCTATTGCTAATAATATAGTGGATCGAGTATCAAGGGGGGAGAGCTGGACTGGGCAGTTCCCTGTGAAGAATAAGATGGGGGAGAGGTTTCTAGCCGTTGCTACCAACACTCCATTCTATGATGATGATGGTACATTAATTGGGATTATTTGCGTATCTAGTGATTCGCAGCCCTTTCAAGAAATAAGAGTTGCAATGTCCAATGAGAGGCAATCAGAAGCTAATGCGAGCTATAATCGTTCCCGAAGCAGTAGTGCTTCGGCAAAGCTTGGTCTTGATCCTCAGCAGCCTATTCAAGCTGCAATTGCCTCCAAAATATCAAATTTGGCTTCCAAGGTGAGCAACAAAGTTCGGAAAATTAAGGCTGGGGAGAACAATGTGGTTCGCGAGGGTGGGAGTGGAGATAGTCATCATTCTGATCATGGTTTCTCAGATGCAGCTTTCTCTGACCATAGGGAGGATGCAACTTCAAGTGGAGCTAGCACCCCCAGAGGAGATGTGGCACCATCTCCTTTTGGCATATTTTCTCAGGCAACTGCTGATGAGAAGTCCCCAGGAAAGAACTTAAGAGATTCTGGTGATGAGAATGAAGGGAAACCTGGGATCCACAGGGTTATTACCTCCAAGGCAGAGGCATGGATTGGCAAGAAAGTTATGTCATGGCCATGGAAAGGGAATGAACGGGAAGGGTCGGAGGTAAAGACAAACCGGTTTGGTTGGCCCTGGTTGCAGAATGATCATGAGAATGACATGGTCCAACCAAAGAATCCCAATTTTGGTGCAAAAACCGAAAACCTGGTGAGTGAAAGTAATCGGCACGGGAATAATGATGCTTCAGGGTCCTGGTCTTCATTTAATGTTAACAGCACGAGCAGTGTAAGTAGCTGTGGCAGTACCAGCAGTAGTGCTGTTAATAAAGTGGACATGGAAACTGACTGCTTGGATTATGAAATTTTGTGGGAAGACTTGACTATTGGAGAACAGATTGGGCAAGGATCTTGTGGAACCGTATATCATGGTCTTTGGTATGGATCAGATGTTGCTATCAAGGTGTTCTCCAAGCAGGAATATTCAGATGACGTGATACTTTCATTCAGACAAGAGGTATCTCTCATGAAAAGGCTTAGACATCCAAATGTTCTGCTCTTCATGGGTGCAGTAACTTCACCTCAGCGTCTATGCATTGTCACTGAGTTCCTTCCACGTGGAAGTTTATTTCGGTTACTCCAAAGGAACACATCCAGACTAGATTGGAGACGACGTGTACACATGGCTTTGGATATAGCACAAGGCATGAACTATCTTCATCATTTCAACCCACCTATCATCCATCGTGATTTGAAGTCTTCAAATCTTCTAGTTGATAGAAACTGGACTGTGAAGGTTGGTGATTTTGGTCTATCACGTCTCAAACATGAAACATATCTCACAACAAAGACTGGGAAAGGAACGCCTCAATGGATGGCTCCAGAGGTTCTCCGTAATGAACCCTCAGATGAGAAGTCTGATGTATATAGTTATGGAGTAATATTATGGGAGCTTGCCACTGAGAAGATCCCTTGGGATAATCTCAACACAATGCAGGTGATTGGAGCTGTTGGTTTTATGAACCAACGGCTTGACATACCAAAAGAAGTGGATTTACGATGGGCTTCTATAATTGAGAGTTGCTGGCACAGTGATCCCCGGAGTAGGCCAACATTCCAGGAATTGCTGGGAAAGTTCAAAGATATACTGAGACAGCAAACTATGCAATTTCAGGCAGCCCGTGCTGCAGCTGGAGATAACACCCAAAAGGAGTTGTAG 2199 45.79 MDTPPAEELLRKIQELEAGHAHLKEEMSKLMVSGPKSDHGHQRSHSTSPQRSRFSSPATSTAGGGGGPAAYKFNDKQYSNILQSMGQSIHIFDLNGRVIYWNRTAEKLYGYSAEEALGQQAIELLSDVQDYAIANNIVDRVSRGESWTGQFPVKNKMGERFLAVATNTPFYDDDGTLIGIICVSSDSQPFQEIRVAMSNERQSEANASYNRSRSSSASAKLGLDPQQPIQAAIASKISNLASKVSNKVRKIKAGENNVVREGGSGDSHHSDHGFSDAAFSDHREDATSSGASTPRGDVAPSPFGIFSQATADEKSPGKNLRDSGDENEGKPGIHRVITSKAEAWIGKKVMSWPWKGNEREGSEVKTNRFGWPWLQNDHENDMVQPKNPNFGAKTENLVSESNRHGNNDASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDMETDCLDYEILWEDLTIGEQIGQGSCGTVYHGLWYGSDVAIKVFSKQEYSDDVILSFRQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSRLDWRRRVHMALDIAQGMNYLHHFNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSYGVILWELATEKIPWDNLNTMQVIGAVGFMNQRLDIPKEVDLRWASIIESCWHSDPRSRPTFQELLGKFKDILRQQTMQFQAARAAAGDNTQKEL* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 694777 701765 - Vvi5g62 Vvi5g62 786204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g62 732 MobiDBLite consensus disorder prediction 27 45 - -
Vvi5g62 732 SMART serkin_6 454 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g62 732 CDD PAS 85 186 IPR000014 -
Vvi5g62 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Vvi5g62 732 MobiDBLite consensus disorder prediction 201 223 - -
Vvi5g62 732 MobiDBLite consensus disorder prediction 27 68 - -
Vvi5g62 732 MobiDBLite consensus disorder prediction 47 62 - -
Vvi5g62 732 ProSiteProfiles PAS repeat profile. 74 145 IPR000014 -
Vvi5g62 732 Gene3D Phosphorylase Kinase; domain 1 447 531 - -
Vvi5g62 732 TIGRFAM sensory_box: PAS domain S-box protein 75 186 IPR000014 -
Vvi5g62 732 PRINTS Tyrosine kinase catalytic domain signature 528 541 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 PRINTS Tyrosine kinase catalytic domain signature 567 585 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 PRINTS Tyrosine kinase catalytic domain signature 614 624 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 PRINTS Tyrosine kinase catalytic domain signature 633 655 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 PRINTS Tyrosine kinase catalytic domain signature 677 699 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 Pfam PAS fold 77 184 IPR013767 GO:0006355
Vvi5g62 732 MobiDBLite consensus disorder prediction 252 335 - -
Vvi5g62 732 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 64 731 - -
Vvi5g62 732 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 183 IPR035965 -
Vvi5g62 732 Gene3D Transferase(Phosphotransferase) domain 1 532 731 - -
Vvi5g62 732 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 64 731 - -
Vvi5g62 732 Pfam Protein tyrosine and serine/threonine kinase 454 704 IPR001245 GO:0004672|GO:0006468
Vvi5g62 732 ProSiteProfiles Protein kinase domain profile. 454 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g62 732 Coils Coil 6 26 - -
Vvi5g62 732 MobiDBLite consensus disorder prediction 252 283 - -
Vvi5g62 732 Gene3D PAS domain 86 190 - -
Vvi5g62 732 SMART pas_2 76 142 IPR000014 -
Vvi5g62 732 MobiDBLite consensus disorder prediction 315 335 - -
Vvi5g62 732 CDD STKc_MAP3K-like 460 703 - -
Vvi5g62 732 SUPERFAMILY Protein kinase-like (PK-like) 439 703 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76672 PF07714 PK_Tyr_Ser-Thr 4.10E-68 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g62 - - vvi:100256793 1389.02