Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g622 ATGGAACAGTTCTCTGGGTACCCGACTCAAGAACCCGACTCCGTCTCTTCCTTCTCTGTCGATGCCGTCTCTTCCTTCTCTGTCGATGCCCAAGGTTTACAGAAACAGATTGATGAGCTATCAAATTTCTCTGATACACCTTCCCCATCAGTAACCAGGATTCTGTACAGCAAGATGGATGTATTCGCTCGCAGATACATTAAAAACTTGATGGGTCTCTCTGGTCTCTCTATTCGAGAGGATGCTGTTGGTAACATATTTGGTCGATGGGAAGGTTATGAGCCAGAGCTTACTGCTGTTGCAACAGGTTCTCACATTGATGCTATTCCATACTCTGGGAAATATGATGGGGTCGTCGGTGTTTTGGGTGCAATAGAAGCCATTAATGTTCTAAGAAGGTCTGGTTTCAAACCTAGAAGGTCATTAGAGGTGATCTTGTTCACTTCAGAAGAGCCTACACGCTTTGGGATCAGCTGCCTGGGAAGCCGCTTATTGGCCGGGAATGAAGCGCTTATGAAATCTCTTGAGACAGTTGTTGATAGTCAAAACATATCCTTTTTTGATGCTGCCAGAGCTGCTGGGTATGCAAATGATGAAGAGGATTTGCCCAGTGTGTTTTTAAAGAAAGGAAGCTATTCTGCTTTTGTGGAGTTGCATATAGAGCAAGGCCCCATTTTGGAGGAGGAAGGAATATCTATTGGCATTGTAACTGCCATTGCTGCCCCTGCAAGTATCAAAGTGGATTTTGAAGGCAATGGAGGCCATGCGGGTGCTGTCTTGATGCCAAATAGAAATGATGCAGGATTGGCAGCTGCAGAGTTAGCACTAGCTGTTGAGAAACATGTGTTAGAATCTGGATCTATTGATACTGTTGGTACTGTGGGTATTCTGGAGCTGCATCCTGGAGCAATCAACAGCATTCCAAGCAAATCACATCTAGAAATTGACACACGCGACATCAATGAAATGCGAAGGAACACTGTAATTGAGAAAACCCATCAGTCTGCTATAACTATAGCCAAGAACCGTGGGGTCAGGCTATCAGAATTTAAAATCATCAATCAAGATCCACCAGCACTTTCAGATAAATCAATAACAAAGGCAATGCAAGCTGCATCTCAAGAGCTAAACCTATCGCACAAGTTGATGATTAGCAGAGCTTACCATGATTCGCTGTTCATGGCCAGAATATCTCCAATGGGTATGATATTCATTCCATGTTACAAAGGATATAGCCACAAGCCTGAAGAATATGCTTCCATTGAGGATATAGCAAATGGGGTCAAGGTATTAGCACTAACACTCACCAAGTTGTCCCTGTACTAA 1326 43.67 MEQFSGYPTQEPDSVSSFSVDAVSSFSVDAQGLQKQIDELSNFSDTPSPSVTRILYSKMDVFARRYIKNLMGLSGLSIREDAVGNIFGRWEGYEPELTAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLRRSGFKPRRSLEVILFTSEEPTRFGISCLGSRLLAGNEALMKSLETVVDSQNISFFDAARAAGYANDEEDLPSVFLKKGSYSAFVELHIEQGPILEEEGISIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDAGLAAAELALAVEKHVLESGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDINEMRRNTVIEKTHQSAITIAKNRGVRLSEFKIINQDPPALSDKSITKAMQAASQELNLSHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYASIEDIANGVKVLALTLTKLSLY* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6756406 6766369 - Vvi5g622 Vvi5g622 786764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g622 441 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 32 437 IPR010158 GO:0016813
Vvi5g622 441 PIRSF Amidase_hyd_carb 25 441 IPR010158 GO:0016813
Vvi5g622 441 CDD M20_bAS 33 435 - -
Vvi5g622 441 SUPERFAMILY Zn-dependent exopeptidases 26 438 - -
Vvi5g622 441 PANTHER ALLANTOATE DEIMINASE-RELATED 21 434 - -
Vvi5g622 441 Pfam Peptidase family M20/M25/M40 102 436 IPR002933 GO:0016787
Vvi5g622 441 Gene3D Zn peptidases 40 431 - -
Vvi5g622 441 Gene3D - 241 357 - -
Vvi5g622 441 PANTHER ALLANTOATE DEIMINASE-RELATED 21 434 IPR010158 GO:0016813
Vvi5g622 441 SUPERFAMILY Bacterial exopeptidase dimerisation domain 244 353 IPR036264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g622 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - vvi:100261431 832.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31