Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g623 ATGGAGCCGACACCCAGACACTCATGCCTGAAGCTTCAAATTCCCAACCAATCGGAACCCATCTTCATCAAGGCCACCTGGTTTCCTTCCCACTTCCACCTCTCTATCACCGACGGCCTCCACGCCTGGCTCTGTAACGCATCGGAAGACGAGGTCCGAGAGCGAGCCGCCCAGTGGGATCAACCCGTTTCTGATTACATCGCCTTGGCAGAGCGGTTCCTAGGGTTTCAGCAGCCCGGTTCGGTTTACGGGTTCTCCGACGCCGGTGACGGCCACAGAAGATTGTCATGGACATTTGAGAAGGAAGGGACTAAGCTAGAATGGCGGTGGAAATGTGGACTCTCACCTGACTCTAGGAGCACTACCGCCGGAGTCCTGGATTTTCTTATGAATGCTAACATTCGACTAAGTGAGGAAGTTGTTATTAAGACCCAATCATTTGAGAGGCTGAAAGTGGAAGCTGAAAAATGTTTAGCACAAAGTGAGAAATTCAACAACGAGAAGGCGGAATTTGAGTCTGCGATCTATGCAAAGTTTCTTGGGGTCTTAAATTCAAAGAAAGCCAAACTCAGAGAGCTTCGAGACCAGATATCAAAAGAAGAAACCACTGGAAAATTGCCACAAGAAGAGGATGAGTCCACTGACAAAACTTTGAGTTTTGACGATGAAAGTGATAATGAAGCAATTGAGGAAGAATCCTCAAAGAATCTTACAGGCACTTCAAAGCATGTTTCTACAAGTAGGCCTCGCGGTCGAAAGAGAGTTGCACCCAGGTGA 777 48.13 MEPTPRHSCLKLQIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVSTSRPRGRKRVAPR* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6777135 6780522 + Vvi5g623 Vvi5g623 786765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g623 258 Pfam DNA double-strand break repair and V(D)J recombination protein XRCC4 30 244 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Vvi5g623 258 MobiDBLite consensus disorder prediction 199 258 - -
Vvi5g623 258 Gene3D - 11 111 IPR038051 -
Vvi5g623 258 PANTHER DNA REPAIR PROTEIN XRCC4 1 254 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Vvi5g623 258 SUPERFAMILY XRCC4, N-terminal domain 22 109 IPR009089 GO:0003677|GO:0005634|GO:0006302|GO:0006310
Vvi5g623 258 MobiDBLite consensus disorder prediction 199 223 - -
Vvi5g623 258 Coils Coil 147 167 - -
Vvi5g623 258 Coils Coil 183 203 - -
Vvi5g623 258 Gene3D - 118 213 IPR014751 -
Vvi5g623 258 SUPERFAMILY XRCC4, C-terminal oligomerization domain 118 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g623 K10886 XRCC4; DNA-repair protein XRCC4 - vvi:100252901 525.013
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g623 . Blo12g00358 Bda03g00849 . Bpe04g00803 . Bma04g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012329 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 0 2 1 1 29