Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g624 ATGTTGCAGAAAAATGCTGCCTCTTCTTCCAGAAGCATTCTTCAAAAGAGTGATATCCCATATTCCCTATCCTCTTTATTTAAAAACCCACCTCAGAGATCTGGTTCCAATTCCAAATCTGAGAAAATTGGTACAAAAGCTAGTCTTTCACCATTCGAAAGTTTGCGTGCTGTGGGTTGTGGGTTTGGGGTGTTTGGTGGATTTCTGAAGAGGGGTTTTGAGCCTGATGCGGTCACGGTCACTACTTTGGTGAAAGGTGTGTGGATGGAGAATGGGATTCCGGATGCAGTTCAATTGTTTGATGAAATGACTGAGAAGGGGCTTTTCGGGGATGCGAAGACCTATGGAATTCTTATCAATGGTCTTTGTAAAGCTCGAAAGACGGGTCTCGCTATTAAGTTGCATGAGAAAATGAAGGGGAATTGCAAGGGTGACGTCTTCACATATGGCATGATCATTGATTCTCTTTGCAAAGATGGGATGACCACTGAGGCGCTGGATATGTTTTCGGAAATGATTGGTGCTGGCATTTTGCCGGATGTTGTTGTTTACAGTTCTTTGATGGATGGACTGTGTAGGTTTGGACGGTTGAAAGAAGCCTTAGAGTTTTTCAAGGAAATGGAGGGTCGAGGAATTTCTGCAGATGTGTATACGTACAACTCCCTGATTCATGGTTTGAGCAGAGCGGGCCTGTGGAAAGAAGTCACATGGTTTTTGAACCTAATGGTGGATCGTGGCTTTTCACCAGATGCCTTTACATTCACCATACTAATAGATGGTCTGTGCAAAGAGGGGAAGGTTGGAGAAGCTCAGCAGATACTTGAACTGATGCATCACAAAGGCAAGGAGCCTGACATATTGACATATAATACGCTCATGAATGGGCTATGTTTGGTGGGTCAGTTGGAAGATGCCACAAAGCTTTTTGAATCTCTGGCGGATAGAGGCATTAAGCTCAATGTATTCAGCTATAATATATTGATTAACGGGTACTGTAAGGACCAGAAGATAGATGAAGCATTTCGCCTTTTTGAAGAAATGCGTCCCAAGGGACTGAAGCCCAGCACCGTTACTTACAACACACTGATTGGAGCTCTATGCCAGTCAGGGAGAGTCAGAACTGCCCAAAAACTATTTGTGGAGATGCAAACTTGTGGCCAATTTCTGAAACTATCTACATATTGTGTTTTGTTGGATGGGCTCTGTAAGAATGGACACCTTGAGGAGGCAATAGATCTATTTCAGTCTATTAAGAAAACTGAACATAAACCAAATATTGAAGTTTTCAGCATACTTCTTGATGGGATGTGCAGAGCTGGTAAATTGGAGGAAGCATGGAAACAATTTGATGAAATCTCAAAGAACGGTTTGGAGCCTGATACTATAGCATATAATATATTGATCAACGGCCTCTGCAACAAAGGAATGTTATCAGAGGCTGTTAAATTGCTTTGGCAAATGGAAGAGAAGGGATGTTTACCAGACTCCATTACGTTCAATGTCATTATTCAAAATCTTCTTAAAGAAAATGAGATCCATGAAGCAATTCAGCTTCTTGAGGAGATGCGGAACAGAAACTTCTCACCTGATGAAGCAGTCACTTCAATGTTACTATGCCTTGCTTCATTTGATCCACAATGGCATGCAGCCCTTGTGTCACTTCCAAATGCTCTCCAAAAGGGGGTTGGATCAGTTCCTGTAAAAAGGAGAAAAACATGA 1719 42.18 MLQKNAASSSRSILQKSDIPYSLSSLFKNPPQRSGSNSKSEKIGTKASLSPFESLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGVGSVPVKRRKT* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6782084 6784040 - Vvi5g624 Vvi5g624 786766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi5g624 572 SUPERFAMILY HCP-like 117 359 - -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 182 216 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 147 181 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 497 531 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 114 139 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 428 461 IPR002885 -
Vvi5g624 572 TIGRFAM PPR: pentatricopeptide repeat domain 357 386 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi5g624 572 PANTHER REPEAT SUPERFAMILY PROTEIN, PUTATIVE-RELATED 54 557 - -
Vvi5g624 572 PANTHER REPEAT SUPERFAMILY PROTEIN, PUTATIVE-RELATED 13 55 - -
Vvi5g624 572 MobiDBLite consensus disorder prediction 24 43 - -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 141 IPR002885 -
Vvi5g624 572 Coils Coil 505 525 - -
Vvi5g624 572 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 54 557 - -
Vvi5g624 572 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 13 55 - -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi5g624 572 Pfam PPR repeat 245 277 IPR002885 -
Vvi5g624 572 Pfam PPR repeat 280 310 IPR002885 -
Vvi5g624 572 Pfam PPR repeat 141 172 IPR002885 -
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 350 419 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 61 137 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 138 207 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 420 488 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 278 349 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 489 543 IPR011990 GO:0005515
Vvi5g624 572 Gene3D Tetratricopeptide repeat domain 208 277 IPR011990 GO:0005515
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi5g624 572 Pfam PPR repeat family 320 368 IPR002885 -
Vvi5g624 572 Pfam PPR repeat family 75 124 IPR002885 -
Vvi5g624 572 Pfam PPR repeat family 393 438 IPR002885 -
Vvi5g624 572 Pfam PPR repeat family 459 507 IPR002885 -
Vvi5g624 572 Pfam PPR repeat family 179 227 IPR002885 -
Vvi5g624 572 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g624 - - - vvi:104879278 1001.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .